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Holger Ebhardt
Holger Ebhardt
Analytical Systems Analyst
Verified email at ucd.ie
Title
Cited by
Cited by
Year
Genome sequence of Halobacterium species NRC-1
WV Ng, SP Kennedy, GG Mahairas, B Berquist, M Pan, HD Shukla, ...
Proceedings of the National Academy of Sciences 97 (22), 12176-12181, 2000
9292000
A repository of assays to quantify 10,000 human proteins by SWATH-MS
G Rosenberger, CC Koh, T Guo, HL Röst, P Kouvonen, BC Collins, ...
Scientific data 1, 140031, 2014
4292014
Homologs of small nucleolar RNAs in Archaea
AD Omer, TM Lowe, AG Russell, H Ebhardt, SR Eddy, PP Dennis
Science 288 (5465), 517-522, 2000
4222000
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
RD Morin, G Aksay, E Dolgosheina, HA Ebhardt, V Magrini, ER Mardis, ...
Genome research 18 (4), 571-584, 2008
3402008
In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
AD Omer, S Ziesche, H Ebhardt, PP Dennis
Proceedings of the National Academy of Sciences 99 (8), 5289-5294, 2002
2512002
Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
HA Ebhardt, HH Tsang, DC Dai, Y Liu, B Bostan, RP Fahlman
Nucleic acids research 37 (8), 2461-2470, 2009
2372009
Extensive 3′ modification of plant small RNAs is modulated by helper component-proteinase expression
HA Ebhardt, EP Thi, MB Wang, PJ Unrau
Proceedings of the National Academy of Sciences 102 (38), 13398-13403, 2005
1842005
Applications of targeted proteomics in systems biology and translational medicine
HA Ebhardt, A Root, C Sander, R Aebersold
Proteomics 15 (18), 3193-3208, 2015
1832015
Breast cancer classification based on proteotypes obtained by SWATH mass spectrometry
P Bouchal, OT Schubert, J Faktor, L Capkova, H Imrichova, K Zoufalova, ...
Cell reports 28 (3), 832-843. e7, 2019
832019
Naturally occurring variations in sequence length creates microRNA isoforms that differ in argonaute effector complex specificity
HA Ebhardt, A Fedynak, RP Fahlman
Silence 1 (1), 12, 2010
742010
Comprehensive proteome analysis of human skeletal muscle in cachexia and sarcopenia: a pilot study
HA Ebhardt, S Degen, V Tadini, A Schilb, N Johns, CA Greig, KCH Fearon, ...
Journal of cachexia, sarcopenia and muscle 8 (4), 567-582, 2017
612017
Platelet-derived microparticles from obese individuals: characterization of number, size, proteomics, and crosstalk with cancer and endothelial cells
R Grande, M Dovizio, S Marcone, PB Szklanna, A Bruno, HA Ebhardt, ...
Frontiers in pharmacology 10, 7, 2019
472019
Proteome-wide association studies identify biochemical modules associated with a wing-size phenotype in Drosophila melanogaster
H Okada, HA Ebhardt, SC Vonesch, R Aebersold, E Hafen
Nature communications 7 (1), 12649, 2016
452016
Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate
HA Ebhardt, E Sabidó, R Hüttenhain, B Collins, R Aebersold
Proteomics 12 (8), 1185-1193, 2012
432012
Correlations of microRNA: microRNA expression patterns reveal insights into microRNA clusters and global microRNA expression patterns
SG Chaulk, HA Ebhardt, RP Fahlman
Molecular BioSystems 12 (1), 110-119, 2016
272016
Selected reaction monitoring mass spectrometry: a methodology overview
HA Ebhardt
Plant Proteomics: Methods and Protocols, 209-222, 2014
232014
RNA secondary structure prediction via energy density minimization
C Alkan, E Karakoc, SC Sahinalp, P Unrau, HA Ebhardt, K Zhang, ...
Research in Computational Molecular Biology: 10th Annual International …, 2006
192006
Substrate requirements for a novel archaeal endonuclease that cleaves within the 5′ external transcribed spacer of Sulfolobus acidocaldarius precursor rRNA
AG Russell, H Ebhardt, PP Dennis
Genetics 152 (4), 1373-1385, 1999
191999
An alternative mechanism for the catalysis of peptide bond formation by L/F transferase: substrate binding and orientation
AW Fung, HA Ebhardt, H Abeysundara, J Moore, Z Xu, RP Fahlman
Journal of molecular biology 409 (4), 617-629, 2011
182011
Differences in the bovine milk whey proteome between early pregnancy and the estrous cycle
D Johnston, IM Estepa, HA Ebhardt, MA Crowe, MG Diskin
Theriogenology 114, 301-307, 2018
172018
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