| Quality control and preprocessing of metagenomic datasets R Schmieder, R Edwards Bioinformatics 27 (6), 863, 2011 | 5144 | 2011 |
| Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets R Schmieder, R Edwards PLoS One 6 (3), e17288, 2011 | 795 | 2011 |
| Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals D Willner, M Furlan, M Haynes, R Schmieder, FE Angly, J Silva, ... PloS one 4 (10), e7370, 2009 | 470 | 2009 |
| Insights into antibiotic resistance through metagenomic approaches R Schmieder, R Edwards Future Microbiology 7 (1), 73-89, 2012 | 420 | 2012 |
| TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets R Schmieder, Y Lim, F Rohwer, R Edwards BMC bioinformatics 11 (1), 341, 2010 | 276 | 2010 |
| The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes FE Angly, D Willner, A Prieto-Davó, RA Edwards, R Schmieder, ... PLoS computational biology 5 (12), e1000593, 2009 | 244 | 2009 |
| Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes TFF Ng, DL Willner, YW Lim, R Schmieder, B Chau, C Nilsson, S Anthony, ... PloS one 6 (6), e20579, 2011 | 238 | 2011 |
| Identification and removal of ribosomal RNA sequences from metatranscriptomes R Schmieder, YW Lim, R Edwards Bioinformatics 28 (3), 433-435, 2012 | 235 | 2012 |
| Spatial distribution of microbial communities in the cystic fibrosis lung D Willner, MR Haynes, M Furlan, R Schmieder, YW Lim, PB Rainey, ... The ISME Journal, 2011 | 207 | 2011 |
| Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities YW Lim, R Schmieder, M Haynes, D Willner, M Furlan, M Youle, K Abbott, ... Journal of Cystic Fibrosis 12 (2), 154-164, 2013 | 190 | 2013 |
| Characterization of Amoeboaphelidium protococcarum, an Algal Parasite New to the Cryptomycota Isolated from an Outdoor Algal Pond Used for the Production of Biofuel PM Letcher, S Lopez, R Schmieder, PA Lee, C Behnke, MJ Powell, ... PLOS ONE 8 (2), e56232, 2013 | 188 | 2013 |
| Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity D Willner, M Furlan, R Schmieder, JA Grasis, DT Pride, DA Relman, ... Proceedings of the National Academy of Sciences 108 (Supplement 1), 4547, 2011 | 170 | 2011 |
| Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis YW Lim, JS Evangelista III, R Schmieder, B Bailey, M Haynes, M Furlan, ... Journal of clinical microbiology 52 (2), 425-437, 2014 | 148 | 2014 |
| Abrolhos bank reef health evaluated by means of water quality, microbial diversity, benthic cover, and fish biomass data T Bruce, PM Meirelles, G Garcia, R Paranhos, CE Rezende, RL de Moura, ... PloS one 7 (6), e36687, 2012 | 146 | 2012 |
| Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2, 3-butanedione fermentation KL Whiteson, S Meinardi, YW Lim, R Schmieder, H Maughan, R Quinn, ... The ISME journal 8 (6), 1247-1258, 2014 | 140 | 2014 |
| Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. D Willner, MR Haynes, M Furlan, N Hanson, B Kirby, YW Lim, PB Rainey, ... American journal of respiratory cell and molecular biology, 2011 | 118 | 2011 |
| Allelic variation contributes to bacterial host specificity M Yue, X Han, LD Masi, C Zhu, X Ma, J Zhang, R Wu, R Schmieder, ... Nature Communications 6 (1), 8754, 2015 | 101 | 2015 |
| Combining de novo and reference-guided assembly with scaffold_builder GGZ Silva, BE Dutilh, TD Matthews, K Elkins, R Schmieder, EA Dinsdale, ... Source code for biology and medicine 8, 1-5, 2013 | 100 | 2013 |
| Reference-independent comparative metagenomics using cross-assembly: crAss BE Dutilh, R Schmieder, J Nulton, B Felts, P Salamon, RA Edwards, ... Bioinformatics 28 (24), 3225-3231, 2012 | 84 | 2012 |
| Multivariate analysis of functional metagenomes EA Dinsdale, RA Edwards, B Bailey, I Tuba, S Akhter, K McNair, ... Frontiers in Genetics 4, 41, 2013 | 73 | 2013 |
Rob EdwardsMatthew Flinders Fellow of Bioinformatics, Flinders University, Adelaide, SA, AustraliaVerified email at flinders.edu.au
