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Robert Schmieder
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Quality control and preprocessing of metagenomic datasets
R Schmieder, R Edwards
Bioinformatics 27 (6), 863, 2011
47132011
Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets
R Schmieder, R Edwards
PLoS One 6 (3), e17288, 2011
7482011
Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals
D Willner, M Furlan, M Haynes, R Schmieder, FE Angly, J Silva, ...
PloS one 4 (10), e7370, 2009
4552009
Insights into antibiotic resistance through metagenomic approaches
R Schmieder, R Edwards
Future Microbiology 7 (1), 73-89, 2012
3982012
TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets
R Schmieder, Y Lim, F Rohwer, R Edwards
BMC bioinformatics 11 (1), 341, 2010
2642010
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes
FE Angly, D Willner, A Prieto-Davů, RA Edwards, R Schmieder, ...
PLoS computational biology 5 (12), e1000593, 2009
2382009
Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes
TFF Ng, DL Willner, YW Lim, R Schmieder, B Chau, C Nilsson, S Anthony, ...
PloS one 6 (6), e20579, 2011
2282011
Identification and removal of ribosomal RNA sequences from metatranscriptomes
R Schmieder, YW Lim, R Edwards
Bioinformatics 28 (3), 433-435, 2012
2232012
Spatial distribution of microbial communities in the cystic fibrosis lung
D Willner, MR Haynes, M Furlan, R Schmieder, YW Lim, PB Rainey, ...
The ISME Journal, 2011
2012011
Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities
YW Lim, R Schmieder, M Haynes, D Willner, M Furlan, M Youle, K Abbott, ...
Journal of Cystic Fibrosis 12 (2), 154-164, 2013
1772013
Characterization of Amoeboaphelidium protococcarum, an Algal Parasite New to the Cryptomycota Isolated from an Outdoor Algal Pond Used for the Production of Biofuel
PM Letcher, S Lopez, R Schmieder, PA Lee, C Behnke, MJ Powell, ...
PLOS ONE 8 (2), e56232, 2013
1742013
Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity
D Willner, M Furlan, R Schmieder, JA Grasis, DT Pride, DA Relman, ...
Proceedings of the National Academy of Sciences 108 (Supplement 1), 4547, 2011
1602011
Abrolhos bank reef health evaluated by means of water quality, microbial diversity, benthic cover, and fish biomass data
T Bruce, PM Meirelles, G Garcia, R Paranhos, CE Rezende, RL de Moura, ...
PloS one 7 (6), e36687, 2012
1382012
Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis
YW Lim, JS Evangelista III, R Schmieder, B Bailey, M Haynes, M Furlan, ...
Journal of clinical microbiology 52 (2), 425-437, 2014
1362014
Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2, 3-butanedione fermentation
KL Whiteson, S Meinardi, YW Lim, R Schmieder, H Maughan, R Quinn, ...
The ISME journal 8 (6), 1247-1258, 2014
1262014
Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung.
D Willner, MR Haynes, M Furlan, N Hanson, B Kirby, YW Lim, PB Rainey, ...
American journal of respiratory cell and molecular biology, 2011
1142011
Allelic variation contributes to bacterial host specificity
M Yue, X Han, LD Masi, C Zhu, X Ma, J Zhang, R Wu, R Schmieder, ...
Nature Communications 6 (1), 1-11, 2015
912015
Combining de novo and reference-guided assembly with scaffold_builder
GGZ Silva, BE Dutilh, TD Matthews, K Elkins, R Schmieder, EA Dinsdale, ...
Source code for biology and medicine 8 (1), 1-5, 2013
882013
Reference-independent comparative metagenomics using cross-assembly: crAss
BE Dutilh, R Schmieder, J Nulton, B Felts, P Salamon, RA Edwards, ...
Bioinformatics 28 (24), 3225-3231, 2012
842012
Multivariate analysis of functional metagenomes
EA Dinsdale, RA Edwards, B Bailey, I Tuba, S Akhter, K McNair, ...
Frontiers in Genetics 4, 41, 2013
702013
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Articles 1–20