| trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses S Capella-Gutiérrez, JM Silla-Martínez, T Gabaldón Bioinformatics 25 (15), 1972-1973, 2009 | 9883 | 2009 |
| Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014 | 2020 | 2014 |
| The genome of melon (Cucumis melo L.) J Garcia-Mas, A Benjak, W Sanseverino, M Bourgeois, G Mir, ... Proceedings of the National Academy of Sciences 109 (29), 11872-11877, 2012 | 830 | 2012 |
| The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) JC Dohm, AE Minoche, D Holtgräwe, S Capella-Gutiérrez, F Zakrzewski, ... Nature 505 (7484), 546-549, 2014 | 698 | 2014 |
| Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida J Collén, B Porcel, W Carré, SG Ball, C Chaparro, T Tonon, T Barbeyron, ... Proceedings of the National Academy of Sciences 110 (13), 5247-5252, 2013 | 415 | 2013 |
| Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ... Science 346 (6215), 1254449, 2014 | 386 | 2014 |
| Towards FAIR principles for research software AL Lamprecht, L Garcia, M Kuzak, C Martinez, R Arcila, E Martin Del Pico, ... Data Science 3 (1), 37-59, 2020 | 312 | 2020 |
| The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima AD Chipman, DEK Ferrier, C Brena, J Qu, DST Hughes, R Schröder, ... PLoS biology 12 (11), e1002005, 2014 | 262 | 2014 |
| PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome J Huerta-Cepas, S Capella-Gutiérrez, LP Pryszcz, M Marcet-Houben, ... Nucl. Acids Res. 42 (D1), D897-D902, 2014 | 255 | 2014 |
| Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi S Capella-Gutiérrez, M Marcet-Houben, T Gabaldon BMC biology 10, 1-14, 2012 | 254 | 2012 |
| Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing R Sánchez, F Serra, J Tárraga, I Medina, J Carbonell, L Pulido, ... Nucleic acids research 39 (suppl_2), W470-W474, 2011 | 254 | 2011 |
| Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016 | 239 | 2016 |
| Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes A Vlasova, S Capella-Gutiérrez, M Rendón-Anaya, M Hernández-Oñate, ... Genome biology 17, 1-18, 2016 | 231 | 2016 |
| The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives R Aversano, F Contaldi, MR Ercolano, V Grosso, M Iorizzo, F Tatino, ... The Plant Cell 27 (4), 954-968, 2015 | 224 | 2015 |
| DOME: recommendations for supervised machine learning validation in biology I Walsh, D Fishman, D Garcia-Gasulla, T Titma, G Pollastri, J Harrow, ... Nature methods 18 (10), 1122-1127, 2021 | 189 | 2021 |
| Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ... Genome biology 17, 1-19, 2016 | 188 | 2016 |
| PhylomeDB v3. 0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions J Huerta-Cepas, S Capella-Gutierrez, LP Pryszcz, I Denisov, D Kormes, ... Nucleic acids research 39 (suppl_1), D556-D560, 2010 | 185 | 2010 |
| Genomic history of the origin and domestication of common bean unveils its closest sister species M Rendón-Anaya, JM Montero-Vargas, S Saburido-Álvarez, A Vlasova, ... Genome biology 18, 1-17, 2017 | 179 | 2017 |
| Ten steps to get started in Genome Assembly and Annotation VD Del Angel, E Hjerde, L Sterck, S Capella-Gutierrez, C Notredame, ... F1000Research 7, 2018 | 162 | 2018 |
| Four simple recommendations to encourage best practices in research software RC Jiménez, M Kuzak, M Alhamdoosh, M Barker, B Batut, M Borg, ... F1000Research 6, 2017 | 142 | 2017 |
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB), Barcelona Supercomputing Centre (BSC)Verified email at crg.es
