| Comprehensive molecular portraits of human breast tumours Cancer Genome Atlas Network Nature 490 (7418), 61, 2012 | 7129 | 2012 |
| Comprehensive molecular characterization of human colon and rectal cancer Cancer Genome Atlas Network Nature 487 (7407), 330, 2012 | 4772 | 2012 |
| The cancer genome atlas pan-cancer analysis project JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ... Nature genetics 45 (10), 1113, 2013 | 3638 | 2013 |
| The somatic genomic landscape of glioblastoma CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ... Cell 155 (2), 462-477, 2013 | 2986 | 2013 |
| Comprehensive genomic characterization of squamous cell lung cancers Cancer Genome Atlas Research Network Nature 489 (7417), 519, 2012 | 2564 | 2012 |
| Comprehensive molecular characterization of clear cell renal cell carcinoma Cancer Genome Atlas Research Network Nature 499 (7456), 43-49, 2013 | 1779 | 2013 |
| Scalable open science approach for mutation calling of tumor exomes using multiple genomic pipelines K Ellrott, MH Bailey, G Saksena, KR Covington, C Kandoth, C Stewart, ... Cell systems 6 (3), 271-281. e7, 2018 | 217 | 2018 |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 211 | 2015 |
| The UCSC cancer genomics browser: update 2013 M Goldman, B Craft, T Swatloski, K Ellrott, M Cline, M Diekhans, S Ma, ... Nucleic acids research 41 (D1), D949-D954, 2013 | 172 | 2013 |
| Identifying transcription factor binding sites through Markov chain optimization K Ellrott, C Yang, FM Sladek, T Jiang Bioinformatics 18 (suppl_2), S100-S109, 2002 | 136 | 2002 |
| PROSPECT II: protein structure prediction program for genome‐scale applications D Kim, D Xu, J Guo, K Ellrott, Y Xu Protein engineering 16 (9), 641-650, 2003 | 132 | 2003 |
| Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas L Omberg, K Ellrott, Y Yuan, C Kandoth, C Wong, MR Kellen, SH Friend, ... Nature genetics 45 (10), 1121-1126, 2013 | 97 | 2013 |
| Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families K Ellrott, L Jaroszewski, W Li, JC Wooley, A Godzik PLoS Comput Biol 6 (6), e1000798, 2010 | 59 | 2010 |
| A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ... Cell systems 7 (4), 422-437. e7, 2018 | 56 | 2018 |
| Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine … Q Xu, P Abdubek, T Astakhova, HL Axelrod, C Bakolitsa, X Cai, D Carlton, ... Acta Crystallographica Section F: Structural Biology and Crystallization …, 2010 | 56 | 2010 |
| TumorMap: exploring the molecular similarities of cancer samples in an interactive portal Y Newton, AM Novak, T Swatloski, DC McColl, S Chopra, K Graim, ... Cancer research 77 (21), e111-e114, 2017 | 42 | 2017 |
| Global optimization of somatic variant identification in cancer genomes with a global community challenge PC Boutros, AD Ewing, K Ellrott, TC Norman, KK Dang, Y Hu, MR Kellen, ... Nature genetics 46 (4), 318-319, 2014 | 38 | 2014 |
| A computational pipeline for protein structure prediction and analysis at genome scale M Shah, S Passovets, D Kim, K Ellrott, L Wang, I Vokler, P LoCascio, D Xu, ... Bioinformatics 19 (15), 1985-1996, 2003 | 34 | 2003 |
| PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction J Guo, K Ellrott, WJ Chung, D Xu, S Passovets, Y Xu Nucleic acids research 32 (suppl_2), W522-W525, 2004 | 30 | 2004 |
| Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain Q Xu, A Bateman, RD Finn, P Abdubek, T Astakhova, HL Axelrod, ... Journal of molecular biology 396 (1), 31-46, 2010 | 29 | 2010 |
Joshua M StuartUC Santa Cruz Genomics InstituteVerified email at ucsc.edu
