Rainer Breitling

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Eriko TakanoProfessor of Synthetic Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Marnix MedemaProfessor of Bioinformatics at Wageningen UniversityVerified email at wur.nl
ritsert jansenProfessor of Bioinformatics, Dean of Talent DevelopmentVerified email at rug.nl
Andris JankevicsBiomolecular Mass Spectrometry and Proteomics, Utrecht UniversityVerified email at uu.nl
David GilbertProfessor of Computer Science, Brunel UniversityVerified email at brunel.ac.uk
Richard ScheltemaAssociate Professor at Utrecht UniversityVerified email at uu.nl
Nigel ScruttonProfessor of Enzymology, Manchester Institute of Biotechnology (MIB) and School of ChemistryVerified email at manchester.ac.uk
Tilmann WeberProfessor / Associate Scientific Director @ DTU Biosustain, Technical University of DenmarkVerified email at biosustain.dtu.dk
Kai BlinSenior Researcher at the Novo Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Patrick ArmengaudGlasgow, Amiens, Versailles, MontpellierVerified email at versailles.inra.fr
Pawel HerzykSenior Lecturer & Head of Sequencing, MCSB and Glasgow Polyomics at the University of GlasgowVerified email at glasgow.ac.uk
Darren CreekAssociate Professor, Drug Delivery, Disposition & Dynamics, Monash Institute of PharmaceuticalVerified email at monash.edu
Pablo CarbonellUniversitat Politècnica de València, ai2 Institute, I2SysBio, CSICVerified email at upv.es
David George WatsonStrathclydeVerified email at strath.ac.uk
Yang Li, PhDProfessor of Computational Biology, Director of CiiM, Helmholtz Centre for Infection Research (HZI)Verified email at helmholtz-hzi.de
Michael A FischbachStanford UniversityVerified email at fischbachgroup.org
Karl BurgessSenior Lecturer, University of EdinburghVerified email at ed.ac.uk
Adrian J JervisUniversity of ManchesterVerified email at manchester.ac.uk
Neil SwainstonEpoch BiodesignVerified email at epochbiodesign.com
Morris SwertzFull Professor / Head of Genomics Coordination Center, Dept of Genetics, University MedicalVerified email at rug.nl

Rainer Breitling

Professor of Systems Biology, Manchester Institute of Biotechnology, University of Manchester

Verified email at manchester.ac.uk - Homepage

Systems Biology Dynamic Modelling Metabolomics Transcriptomics Synthetic Biology


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antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters T Weber, K Blin, S Duddela, D Krug, HU Kim, R Bruccoleri, SY Lee, ... Nucleic acids research 43 (W1), W237-W243, 2015	1985	2015
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences MH Medema, K Blin, P Cimermancic, V de Jager, P Zakrzewski, ... Nucleic Acids Research 39 (suppl 2), W339-W346, 2011	1884	2011
Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments R Breitling, P Armengaud, A Amtmann, P Herzyk FEBS letters 573 (1-3), 83-92, 2004	1793	2004
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification K Blin, T Wolf, MG Chevrette, X Lu, CJ Schwalen, SA Kautsar, ... Nucleic acids research 45 (W1), W36-W41, 2017	1200	2017
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers K Blin, MH Medema, D Kazempour, MA Fischbach, R Breitling, E Takano, ... Nucleic acids research 41 (W1), W204-W212, 2013	932	2013
RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis F Hong, R Breitling, CW McEntee, BS Wittner, JL Nemhauser, J Chory Bioinformatics 22 (22), 2825-2827, 2006	849	2006
Minimum information about a biosynthetic gene cluster MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ... Nature chemical biology 11 (9), 625-631, 2015	786	2015
Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics WB Dunn, A Erban, RJM Weber, DJ Creek, M Brown, R Breitling, ... Metabolomics 9, 44-66, 2013	594	2013
The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling P Armengaud, R Breitling, A Amtmann Plant physiology 136 (1), 2556-2576, 2004	559	2004
C. elegans model identifies genetic modifiers of α-synuclein inclusion formation during aging TJ Van Ham, KL Thijssen, R Breitling, RMW Hofstra, RHA Plasterk, ... PLoS genetics 4 (3), e1000027, 2008	445	2008
Toward Global Metabolomics Analysis with Hydrophilic Interaction Liquid Chromatography–Mass Spectrometry: Improved Metabolite Identification by Retention Time Prediction DJ Creek, A Jankevics, R Breitling, DG Watson, MP Barrett, KEV Burgess Analytical chemistry 83 (22), 8703-8710, 2011	379	2011
Regulation of ubiquitin-binding proteins by monoubiquitination D Hoeller, N Crosetto, B Blagoev, C Raiborg, R Tikkanen, S Wagner, ... Nature cell biology 8 (2), 163-169, 2006	372	2006
PeakML/mzMatch: a file format, Java library, R library, and tool-chain for mass spectrometry data analysis RA Scheltema, A Jankevics, RC Jansen, MA Swertz, R Breitling Analytical Chemistry-Columbus 83 (7), 2786, 2011	352	2011
Detecting sequence homology at the gene cluster level with MultiGeneBlast MH Medema, E Takano, R Breitling Molecular biology and evolution 30 (5), 1218-1223, 2013	348	2013
IDEOM: an Excel interface for analysis of LC–MS-based metabolomics data DJ Creek, A Jankevics, KEV Burgess, R Breitling, MP Barrett Bioinformatics 28 (7), 1048-1049, 2012	342	2012
Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans Y Li, OA Alvarez, EW Gutteling, M Tijsterman, J Fu, JAG Riksen, ... PLoS genetics 2 (12), e222, 2006	331	2006
GeneRank: Using search engine technology for the analysis of microarray experiments M Julie, B Rainer, H Desmond, G David BMC Bioinformatics 6, 2005	325	2005
A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments F Hong, R Breitling Bioinformatics 24 (3), 374-382, 2008	300	2008
System-wide molecular evidence for phenotypic buffering in Arabidopsis J Fu, JJB Keurentjes, H Bouwmeester, T America, FWA Verstappen, ... Nature genetics 41 (2), 166-167, 2009	282	2009
DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules BM Tesson, R Breitling, RC Jansen BMC bioinformatics 11 (1), 1-9, 2010	265	2010

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