Paul Zumbo
Paul Zumbo
Senior Staff Associate of Computational Genomics, Weill Cornell Medical College
Verified email at
Cited by
Cited by
Comprehensive analysis of mRNA methylation reveals enrichment in 3′ UTRs and near stop codons
KD Meyer, Y Saletore, P Zumbo, O Elemento, CE Mason, SR Jaffrey
Cell 149 (7), 1635-1646, 2012
Genetic diagnosis by whole exome capture and massively parallel DNA sequencing
M Choi, UI Scholl, W Ji, T Liu, IR Tikhonova, P Zumbo, A Nayir, ...
Proceedings of the National Academy of Sciences 106 (45), 19096-19101, 2009
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
F Rapaport, R Khanin, Y Liang, M Pirun, A Krek, P Zumbo, CE Mason, ...
Genome biology 14, 1-13, 2013
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Nature biotechnology 32 (9), 903-914, 2014
TOX is a critical regulator of tumour-specific T cell differentiation
AC Scott, F DŁndar, P Zumbo, SS Chandran, CA Klebanoff, M Shakiba, ...
Nature 571 (7764), 270-274, 2019
Detecting and correcting systematic variation in large-scale RNA sequencing data
S Li, PP Łabaj, P Zumbo, P Sykacek, W Shi, L Shi, J Phan, PY Wu, ...
Nature biotechnology 32 (9), 888-895, 2014
Geospatial resolution of human and bacterial diversity with city-scale metagenomics
E Afshinnekoo, C Meydan, S Chowdhury, D Jaroudi, C Boyer, N Bernstein, ...
Cell systems 1 (1), 72-87, 2015
Relapse-specific mutations in NT5C2 in childhood acute lymphoblastic leukemia
JA Meyer, J Wang, LE Hogan, JJ Yang, S Dandekar, JP Patel, Z Tang, ...
Nature genetics 45 (3), 290-294, 2013
Sex-specific and lineage-specific alternative splicing in primates
R Blekhman, JC Marioni, P Zumbo, M Stephens, Y Gilad
Genome research 20 (2), 180-189, 2010
Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study
S Li, SW Tighe, CM Nicolet, D Grove, S Levy, W Farmerie, A Viale, ...
Nature biotechnology 32 (9), 915-925, 2014
A hybrid mechanism of action for BCL6 in B cells defined by formation of functionally distinct complexes at enhancers and promoters
K Hatzi, Y Jiang, C Huang, F Garrett-Bakelman, MD Gearhart, ...
Cell reports 4 (3), 578-588, 2013
Adaptable haemodynamic endothelial cells for organogenesis and tumorigenesis
B Palikuqi, DHT Nguyen, G Li, R Schreiner, AF Pellegata, Y Liu, ...
Nature 585 (7825), 426-432, 2020
Fully defined human pluripotent stem cell-derived microglia and tri-culture system model C3 production in Alzheimer’s disease
SR Guttikonda, L Sikkema, J Tchieu, N Saurat, RM Walsh, O Harschnitz, ...
Nature Neuroscience 24 (3), 343-354, 2021
An optimized algorithm for detecting and annotating regional differential methylation
S Li, FE Garrett-Bakelman, A Akalin, P Zumbo, R Levine, BL To, ID Lewis, ...
BMC bioinformatics 14, 1-9, 2013
An autoimmune stem-like CD8 T cell population drives type 1 diabetes
SV Gearty, F DŁndar, P Zumbo, G Espinosa-Carrasco, M Shakiba, ...
Nature 602 (7895), 156-161, 2022
Genome-scale screens identify JNK–JUN signaling as a barrier for pluripotency exit and endoderm differentiation
QV Li, G Dixon, N Verma, BP Rosen, M Gordillo, R Luo, C Xu, Q Wang, ...
Nature genetics 51 (6), 999-1010, 2019
TCR signal strength defines distinct mechanisms of T cell dysfunction and cancer evasion
M Shakiba, P Zumbo, G Espinosa-Carrasco, L Menocal, F DŁndar, ...
Journal of Experimental Medicine 219 (2), e20201966, 2021
The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics
L Pipes, S Li, M Bozinoski, R Palermo, X Peng, P Blood, S Kelly, ...
Nucleic acids research 41 (D1), D906-D914, 2013
Immunogenicity and therapeutic targeting of a public neoantigen derived from mutated PIK3CA
SS Chandran, J Ma, MG Klatt, F DŁndar, C Bandlamudi, P Razavi, ...
Nature medicine 28 (5), 946-957, 2022
Introduction to differential gene expression analysis using RNA-seq
F DŁndar, L Skrabanek, P Zumbo
Appl. Bioinformatics, 1-67, 2015
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