PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples C Hong, S Manimaran, Y Shen, JF Perez-Rogers, AL Byrd, ... Microbiome 2, 1-15, 2014 | 219 | 2014 |
Shared gene expression alterations in nasal and bronchial epithelium for lung cancer detection JF Perez-Rogers, J Gerrein, C Anderlind, G Liu, S Zhang, Y Alekseyev, ... JNCI: Journal of the National Cancer Institute 109 (7), djw327, 2017 | 70 | 2017 |
Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data AL Byrd, JF Perez-Rogers, S Manimaran, E Castro-Nallar, I Toma, ... BMC bioinformatics 15, 1-14, 2014 | 70 | 2014 |
Kernelized partial least squares for feature reduction and classification of gene microarray data WH Land, X Qiao, DE Margolis, WS Ford, CT Paquette, JF Perez-Rogers, ... BMC systems biology 5, 1-18, 2011 | 15 | 2011 |
Nasal epithelium gene expression signature and classifier for the prediction of lung cancer A Spira, M Lenburg, J Perez-Rogers, C Anderlind US Patent App. 16/300,947, 2019 | 12 | 2019 |
Leveraging gene expression in the bronchial airway to develop a nasal biomarker for early detection of lung cancer JF Perez-Rogers, J Gerrein, C Anderlind, RL Kusko, JD Campbell, ... A107. THE LUNG'S SILVER LINING: AIRWAY AND ALVEOLAR EPITHELIAL BIOLOGY …, 2014 | 3 | 2014 |
Nasal epithelium gene expression signature and classifier for the prediction of lung cancer A Spira, ME Lenburg, J Perez-Rogers, C Anderlind US Patent App. 17/397,905, 2021 | 2 | 2021 |
Nasal Epithelial Gene Expression Is Altered In Patients With Lung Cancer And Reflects The Cancer-Associated Gene Expression Changes Observed In The Bronchial Epithelium J Perez-Rogers, J Gerrein, C Anderlind, G Liu, S Zhang, Y Alekseyev, ... D99. NOVEL TRANSLATIONAL BIOMARKERS IN LUNG CANCER, A7535-A7535, 2016 | 1 | 2016 |
A Bronchial Airway Gene Expression Signature Associated With Adenocarcinoma Vs. Squamous Cell Lung Cancer J Zhang, J Perez-Rogers, K Porta-Smith, D Whitney, M Lenburg, A Spira, ... A71. ONCOGENES AND ANGIOGENESIS IN LUNG TUMORS, A2372-A2372, 2017 | | 2017 |
A71 ONCOGENES AND ANGIOGENESIS IN LUNG TUMORS: A Bronchial Airway Gene Expression Signature Associated With Adenocarcinoma Vs. Squamous Cell Lung Cancer J Zhang, J Perez-Rogers, K Porta-Smith, D Whitney, M Lenburg, A Spira, ... American Journal of Respiratory and Critical Care Medicine 195, 2017 | | 2017 |
Development of a minimally invasive molecular biomarker for early detection of lung cancer J Perez-Rogers | | 2017 |
Leveraging transcriptomic and genomic data to better select models for preclinical oncology therapeutic development to identify cell lines most similar to patient tumors Y Cha, A Labradorf, J Perez-Rogers, B Haas, A Lysaght, B Weiner, ... Cancer Research 76 (14_Supplement), 789-789, 2016 | | 2016 |
Leveraging transcriptomic data to pinpoint mechanisms of gemcitabine resistance and potential combination therapies for pancreatic cancer. RL Kusko, Y Cha, J Perez-Rogers, N Caballero, G Koytiger, J Shankar, ... Journal of Clinical Oncology 34 (15_suppl), e15730-e15730, 2016 | | 2016 |
D99 NOVEL TRANSLATIONAL BIOMARKERS IN LUNG CANCER: Nasal Epithelial Gene Expression Is Altered In Patients With Lung Cancer And Reflects The Cancer-Associated Gene Expression … J Perez-Rogers, J Gerrein, C Anderlind, G Liu, S Zhang, Y Alekseyev, ... American Journal of Respiratory and Critical Care Medicine 193, 1, 2016 | | 2016 |
Abstract B1-50: Leveraging gene expression in the bronchial airway to develop a nasal biomarker for early detection of lung cancer JF Perez-Rogers, J Gerrein, C Anderlind, RL Kusko, JD Campbell, ... Cancer Research 75 (22_Supplement_2), B1-50-B1-50, 2015 | | 2015 |
Improving pancreatic cancer drug discovery by leveraging genomics to select better in vitro models Y Cha, J Perez-Rogers, A Lysaght, B Weiner, S Kolitz, F Towfic, J Funt, ... Cell 10, C3, 2015 | | 2015 |
Leveraging bronchial airway gene expression to develop a nasal biomarker for lung cancer detection J Perez-Rogers, J Gerrein, C Anderlind, X Xiao, H Liu, R Kusko, ... Cancer Research 75 (15_Supplement), 1574-1574, 2015 | | 2015 |
Airway Gene Expression Alterations Associated With Lung Carcinogenesis In Smokers With COPD J Kantrowitz, RL Kusko, JF Perez-Rogers, AZ Jiwani, K Porta, DH Whitney, ... A30. BIG DATA: HARVESTING FRUITS FROM COPD AND LUNG CANCER, A1254-A1254, 2015 | | 2015 |
Gene and miRNA expression networks specific to never smoker lung adenocarcinoma R Kusko, C Garrison, T Wang, J Campbell, J Perez-Rogers, L Luo, ... Cancer Research 74 (19_Supplement), 3554-3554, 2014 | | 2014 |
Matched Nasal And Bronchial Epithelial Gene Expression Alterations Associated With Chronic Obstructive Pulmonary Disease AZ Jiwani, RL Kusko, J Perez-Rogers, C Anderlind, K Steiling, K Porta, ... C107. INFORMING LUNG DISEASE WITH BIOINFORMATICS, A5282-A5282, 2014 | | 2014 |