|VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics|
K Megy, SJ Emrich, D Lawson, D Campbell, E Dialynas, DST Hughes, ...
Nucleic Acids Research, 2011
|Harnessing parallelism in multicore clusters with the all-pairs, wavefront, and makeflow abstractions|
L Yu, C Moretti, A Thrasher, S Emrich, K Judd, D Thain
Cluster Computing 13 (3), 243-256, 2010
|Genetic risk for subsequent neoplasms among long-term survivors of childhood cancer|
Z Wang, CL Wilson, J Easton, A Thrasher, H Mulder, Q Liu, DJ Hedges, ...
Journal of Clinical Oncology 36 (20), 2078, 2018
|Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome|
M Rusch, J Nakitandwe, S Shurtleff, S Newman, Z Zhang, MN Edmonson, ...
Nature communications 9 (1), 1-13, 2018
|A framework for scalable genome assembly on clusters, clouds, and grids|
C Moretti, A Thrasher, L Yu, M Olson, S Emrich, D Thain
IEEE Transactions on Parallel and Distributed Systems 23 (12), 2189-2197, 2012
|Taming complex bioinformatics workflows with weaver, makeflow, and starch|
A Thrasher, R Carmichael, P Bui, L Yu, D Thain, S Emrich
The 5th Workshop on Workflows in Support of Large-Scale Science, 1-6, 2010
|Scaling up genome annotation using MAKER and work queue|
A Thrasher, Z Musgrave, B Kachmarck, D Thain, S Emrich
International Journal of Bioinformatics Research and Applications 2 10 (4-5 …, 2014
|Scripting distributed scientific workflows using Weaver|
P Bui, L Yu, A Thrasher, R Carmichael, I Lanc, P Donnelly, D Thain
Concurrency and Computation: Practice and Experience 24 (15), 1685-1707, 2012
|Case Studies in Designing Elastic Applications|
D Rajan, A Thrasher, JAI Badi’Abdul-Wahid, S Emrich, D Thain
CCGrid2013 the 13th IEEE/ACM International Symposium on Cluster, Cloud and …, 2013
|Shifting the Bioinformatics Computing Paradigm: A Case Study using Genome|
A Thrasher, Z Musgrave, D Thain, S Emrich
Computational Advances in Bio and Medical Sciences (ICCABS), 2012 IEEE 2nd …, 2012
|Shifting the Bioinformatics Computing Paradigm: A Case Study in Parallelizing Genome Annotation Using MAKER and Work Queue|
A Thrasher, Z Musgrave, D Thain, S Emrich
International Conference on Computational Advances in Bio and Medical …, 2012
|CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data|
L Tian, Y Li, MN Edmonson, X Zhou, S Newman, C McLeod, A Thrasher, ...
Genome Biology 21 (1), 1-18, 2020
|Germline mutations in cancer predisposition genes and risk for subsequent neoplasms among long-term survivors of childhood cancer in the St. Jude Lifetime Cohort|
Z Wang, CL Wilson, J Easton, D Hedges, Q Liu, G Wu, M Rusch, ...
Cancer Research 77 (13 Supplement), 3001-3001, 2017
|Precision Medicine for Sickle Cell Disease through Whole Genome Sequencing|
E Rampersaud, LE Palmer, JS Hankins, VA Sheehan, W Bi, H Mulder, ...
Blood 132 (Supplement 1), 3641-3641, 2018
|CICERO: An accurate method for detecting complex and diverse driver fusions using cancer transcriptome sequencing (RNA-seq) data|
L Tian, Y Li, MN Edmonson, X Zhou, S Newman, C McLeod, Y Liu, B Tang, ...
Cancer Research 80 (16 Supplement), 5478-5478, 2020
|St. Jude Cloud a Pediatric Cancer Genomic Data Sharing Ecosystem|
C McLeod, AM Gout, X Zhou, D Rahbarinia, A Thrasher, S Newman, ...
|MethylationToActivity: a deep-learning framework that reveals promoter activity landscapes from DNA methylomes in individual tumors|
J Williams, B Xu, D Putnam, A Thrasher, X Chen
|XenoCP: Cloud-based BAM cleansing tool for RNA and DNA from Xenograft|
M Rusch, L Ding, S Arunachalam, A Thrasher, H Jin, M Macias, L Kasper, ...
bioRxiv, 843250, 2020
|Clinical Utilization of Whole-Genome, Whole-Exome and Transcriptome Sequencing Integrative Analysis for Pediatric Oncology Molecular Diagnostics|
EM Azzato, M Rusch, S Shurtleff, J Nakitandwe, Z Zhang, D Hedges, ...
JOURNAL OF MOLECULAR DIAGNOSTICS 18 (6), 1007-1007, 2016
|Molecular diagnosis for pediatric cancer through integrative analysis of whole-genome, whole-exome and transcriptome sequencing|
J Zhang, M Rusch, J Nakitandwe, Z Zhang, MN Edmonson, M Parker, ...
Cancer Research 76 (14 Supplement), 2628-2628, 2016