| Pathogen-induced TLR4-TRIF innate immune signaling in hematopoietic stem cells promotes proliferation but reduces competitive fitness H Takizawa, K Fritsch, LV Kovtonyuk, Y Saito, C Yakkala, K Jacobs, ... Cell stem cell 21 (2), 225-240. e5, 2017 | 252 | 2017 |
| Mesenchymal niche-specific expression of Cxcl12 controls quiescence of treatment-resistant leukemia stem cells P Agarwal, S Isringhausen, H Li, AJ Paterson, J He, Á Gomariz, ... Cell Stem Cell 24 (5), 769-784. e6, 2019 | 162 | 2019 |
| Quantitative spatial analysis of haematopoiesis-regulating stromal cells in the bone marrow microenvironment by 3D microscopy A Gomariz, PM Helbling, S Isringhausen, U Suessbier, A Becker, A Boss, ... Nature communications 9 (1), 2532, 2018 | 130 | 2018 |
| Siamese networks with location prior for landmark tracking in liver ultrasound sequences A Gomariz, W Li, E Ozkan, C Tanner, O Goksel 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019 …, 2019 | 45 | 2019 |
| Chronic viral infections persistently alter marrow stroma and impair hematopoietic stem cell fitness S Isringhausen, YV Mun, L Kovtonyuk, NJ Kräutler, U Suessbier, ... Journal of Experimental Medicine 218 (12), e20192070, 2021 | 30 | 2021 |
| Imaging and spatial analysis of hematopoietic stem cell niches A Gomariz, S Isringhausen, PM Helbling, C Nombela‐Arrieta Annals of the New York Academy of Sciences 1466 (1), 5-16, 2020 | 20 | 2020 |
| Multiparametric imaging reveals that mitochondria‐rich intercalated cells in the kidney collecting duct have a very high glycolytic capacity S Ghazi, S Bourgeois, A Gomariz, M Bugarski, D Haenni, JR Martins, ... The FASEB Journal 34 (6), 8510-8525, 2020 | 15 | 2020 |
| In-vivo quantitative image analysis of age-related morphological changes of C. elegans neurons reveals a correlation between neurite bending and novel neurite outgrowths M Hess, A Gomariz, O Goksel, CY Ewald Eneuro 6 (4), 2019 | 12 | 2019 |
| Modality attention and sampling enables deep learning with heterogeneous marker combinations in fluorescence microscopy A Gomariz, T Portenier, PM Helbling, S Isringhausen, U Suessbier, ... Nature machine intelligence 3 (9), 799-811, 2021 | 10 | 2021 |
| Unsupervised domain adaptation with contrastive learning for OCT segmentation A Gomariz, H Lu, YY Li, T Albrecht, A Maunz, F Benmansour, ... International Conference on Medical Image Computing and Computer-Assisted …, 2022 | 9 | 2022 |
| Biased IL-2 signals induce Foxp3-rich pulmonary lymphoid structures and facilitate long-term lung allograft acceptance in mice Y Yamada, TT Nguyen, D Impellizzieri, K Mineura, R Shibuya, A Gomariz, ... Nature Communications 14 (1), 1383, 2023 | 8 | 2023 |
| Probabilistic spatial analysis in quantitative microscopy with uncertainty-aware cell detection using deep Bayesian regression A Gomariz, T Portenier, C Nombela-Arrieta, O Goksel Science Advances 8 (5), eabi8295, 2022 | 5 | 2022 |
| Imaging of sliding visceral interfaces during breathing O Goksel, V Vishnevsky, AG Carrillo, C Tanner 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), 298-301, 2016 | 4 | 2016 |
| Aggregation Model Hyperparameters Matter in Digital Pathology G Bredell, M Fischer, P Szostak, S Abbasi-Sureshjani, A Gomariz arXiv preprint arXiv:2311.17804, 2023 | 1 | 2023 |
| Utilizing uncertainty estimation in deep learning segmentation of fluorescence microscopy images with missing markers A Gomariz, R Egli, T Portenier, C Nombela-Arrieta, O Goksel 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 371-374, 2021 | 1 | 2021 |
| CD8 T cells induce destruction of bone marrow stromal niches and hematopoietic stem cell dysfunction in chronic viral infections S Isringhausen, L Kovtonyuk, U Suessbier, NJ Kraeutler, A Gomariz, ... bioRxiv, 2020.05. 07.076083, 2020 | 1 | 2020 |
| Integrating multiscale topology in digital pathology with pyramidal graph convolutional networks V Ibañez, P Szostak, Q Wong, K Korski, S Abbasi-Sureshjani, A Gomariz arXiv preprint arXiv:2403.15068, 2024 | | 2024 |
| Device adaptation of optical coherence tomography (OCT) retinal layer segmentation algorithm using unlabeled target data Y Kikuchi, A Gomariz, Y Li, H Lu, T Albrecht, D Ferrara Investigative Ophthalmology & Visual Science 64 (8), 1107-1107, 2023 | | 2023 |
| Tissue-scale dynamic mapping of Hematopoietic Stem Cells and supportive niche cells in the fetal liver PM Helbling, A Vijaykumar, A Gomariz, KA Zielinska, T Zerkatje, K Loosli, ... bioRxiv, 2023.09. 12.554625, 2023 | | 2023 |
| 3206–TISSUE-SCALE SPATIAL ANALYSIS OF HEMATOPOIETIC STEM CELLS AND STROMAL NICHE SUBTYPES IN THE FETAL LIVER MICROENVIRONMENT A Vijaykumar, P Helbling, A Gomariz, S Isringhausen, K Loosli, MG Manz, ... Experimental Hematology 124, S152, 2023 | | 2023 |
