| Scalable molecular dynamics on CPU and GPU architectures with NAMD JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ... The Journal of chemical physics 153 (4), 2020 | 2008 | 2020 |
| Imaging α-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map A Aksimentiev, K Schulten Biophysical journal 88 (6), 3745-3761, 2005 | 777 | 2005 |
| Microscopic kinetics of DNA translocation through synthetic nanopores A Aksimentiev, JB Heng, G Timp, K Schulten Biophysical journal 87 (3), 2086-2097, 2004 | 460 | 2004 |
| Slowing down DNA translocation through a nanopore in lithium chloride SW Kowalczyk, DB Wells, A Aksimentiev, C Dekker Nano letters 12 (2), 1038-1044, 2012 | 451 | 2012 |
| Sizing DNA using a nanometer-diameter pore JB Heng, C Ho, T Kim, R Timp, A Aksimentiev, YV Grinkova, S Sligar, ... Biophysical journal 87 (4), 2905-2911, 2004 | 438 | 2004 |
| Orientation discrimination of single-stranded DNA inside the α-hemolysin membrane channel J Mathé, A Aksimentiev, DR Nelson, K Schulten, A Meller Proceedings of the National Academy of Sciences 102 (35), 12377-12382, 2005 | 428 | 2005 |
| Water− silica force field for simulating nanodevices ER Cruz-Chu, A Aksimentiev, K Schulten The Journal of Physical Chemistry B 110 (43), 21497-21508, 2006 | 384 | 2006 |
| Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore H Ouldali, K Sarthak, T Ensslen, F Piguet, P Manivet, J Pelta, ... Nature biotechnology 38 (2), 176-181, 2020 | 359 | 2020 |
| Improved Parametrization of Li+, Na+, K+, and Mg2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems J Yoo, A Aksimentiev The journal of physical chemistry letters 3 (1), 45-50, 2012 | 343 | 2012 |
| Assessing graphene nanopores for sequencing DNA DB Wells, M Belkin, J Comer, A Aksimentiev Nano letters 12 (8), 4117-4123, 2012 | 330 | 2012 |
| The electromechanics of DNA in a synthetic nanopore JB Heng, A Aksimentiev, C Ho, P Marks, YV Grinkova, S Sligar, ... Biophysical journal 90 (3), 1098-1106, 2006 | 280 | 2006 |
| Multiple rereads of single proteins at single–amino acid resolution using nanopores H Brinkerhoff, ASW Kang, J Liu, A Aksimentiev, C Dekker Science 374 (6574), 1509-1513, 2021 | 279 | 2021 |
| Simulation of the electric response of DNA translocation through a semiconductor nanopore–capacitor ME Gracheva, A Xiong, A Aksimentiev, K Schulten, G Timp, JP Leburton Nanotechnology 17 (3), 622, 2006 | 264 | 2006 |
| The emerging landscape of single-molecule protein sequencing technologies JA Alfaro, P Bohländer, M Dai, M Filius, CJ Howard, XF Van Kooten, ... Nature methods 18 (6), 604-617, 2021 | 259 | 2021 |
| Modeling and simulation of ion channels C Maffeo, S Bhattacharya, J Yoo, D Wells, A Aksimentiev Chemical reviews 112 (12), 6250-6284, 2012 | 242 | 2012 |
| Stretching DNA using the electric field in a synthetic nanopore JB Heng, A Aksimentiev, C Ho, P Marks, YV Grinkova, S Sligar, ... Nano letters 5 (10), 1883-1888, 2005 | 242 | 2005 |
| Detection of DNA sequences using an alternating electric field in a nanopore capacitor G Sigalov, J Comer, G Timp, A Aksimentiev Nano letters 8 (1), 56-63, 2008 | 221 | 2008 |
| Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability TTM Ngo, J Yoo, Q Dai, Q Zhang, C He, A Aksimentiev, T Ha Nature communications 7 (1), 10813, 2016 | 215 | 2016 |
| Deciphering ionic current signatures of DNA transport through a nanopore A Aksimentiev Nanoscale 2 (4), 468-483, 2010 | 207 | 2010 |
| New tricks for old dogs: improving the accuracy of biomolecular force fields by pair-specific corrections to non-bonded interactions J Yoo, A Aksimentiev Physical Chemistry Chemical Physics 20 (13), 8432-8449, 2018 | 203 | 2018 |
