Jos Boekhorst
Jos Boekhorst
NIZO food research
Verified email at nizo.com
TitleCited byYear
Complete genome sequence of Lactobacillus plantarum WCFS1
M Kleerebezem, J Boekhorst, R van Kranenburg, D Molenaar, OP Kuipers, ...
Proceedings of the National Academy of Sciences 100 (4), 1990-1995, 2003
13332003
Iron fortification adversely affects the gut microbiome, increases pathogen abundance and induces intestinal inflammation in Kenyan infants
T Jaeggi, GAM Kortman, D Moretti, C Chassard, P Holding, A Dostal, ...
Gut 64 (5), 731-742, 2015
2422015
Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?
WG Touw, JR Bayjanov, L Overmars, L Backus, J Boekhorst, M Wels, ...
Briefings in bioinformatics 14 (3), 315-326, 2012
2232012
Flavour formation from amino acids by lactic acid bacteria: predictions from genome sequence analysis
R van Kranenburg, M Kleerebezem, J van Hylckama Vlieg, BM Ursing, ...
International Dairy Journal 12 (2-3), 111-121, 2002
1882002
Comparative analysis of proteins with a mucus-binding domain found exclusively in lactic acid bacteria
J Boekhorst, Q Helmer, M Kleerebezem, RJ Siezen
1812006
Pyrosequencing-based comparative genome analysis of the nosocomial pathogen Enterococcus faecium and identification of a large transferable pathogenicity island
W van Schaik, J Top, DR Riley, J Boekhorst, JEP Vrijenhoek, ...
BMC genomics 11 (1), 239, 2010
1792010
Degenerate target sites mediate rapid primed CRISPR adaptation
PC Fineran, MJH Gerritzen, M Suárez-Diez, T Künne, J Boekhorst, ...
Proceedings of the National Academy of Sciences 111 (16), E1629-E1638, 2014
1692014
In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling
PJ Boersema, LY Foong, VMY Ding, S Lemeer, B van Breukelen, R Philp, ...
Molecular & Cellular Proteomics 9 (1), 84-99, 2010
1652010
Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs
J Boekhorst, MWHJ de Been, M Kleerebezem, RJ Siezen
Journal of bacteriology 187 (14), 4928-4934, 2005
1612005
LocateP: genome-scale subcellular-location predictor for bacterial proteins
M Zhou, J Boekhorst, C Francke, RJ Siezen
BMC bioinformatics 9 (1), 173, 2008
1442008
Microbiome dynamics of human epidermis following skin barrier disruption
PLJM Zeeuwen, J Boekhorst, EH van den Bogaard, HD de Koning, ...
Genome biology 13 (11), R101, 2012
1382012
The predicted secretome of Lactobacillus plantarum WCFS1 sheds light on interactions with its environment
J Boekhorst, MWW Sanders, M Kleerebezem, RJ Siezen
1362006
The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content
J Boekhorst, RJ Siezen, MC Zwahlen, D Vilanova, RD Pridmore, ...
Microbiology 150 (11), 3601-3611, 2004
1282004
Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome
RJ Siezen, C Francke, B Renckens, J Boekhorst, M Wels, M Kleerebezem, ...
Journal of bacteriology 194 (1), 195-196, 2012
1092012
Genome-scale genotype-phenotype matching of two Lactococcus lactis isolates from plants identifies mechanisms of adaptation to the plant niche
RJ Siezen, MJC Starrenburg, J Boekhorst, B Renckens, D Molenaar, ...
Appl. Environ. Microbiol. 74 (2), 424-436, 2008
1022008
Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity
T Smokvina, M Wels, J Polka, C Chervaux, S Brisse, J Boekhorst, ...
PloS one 8 (7), e68731, 2013
972013
Comparative genomics of prevaccination and modern Bordetella pertussis strains
MJ Bart, M van Gent, HGJ van der Heide, J Boekhorst, P Hermans, ...
BMC genomics 11 (1), 627, 2010
972010
Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria
R Siezen, J Boekhorst, L Muscariello, D Molenaar, B Renckens, ...
BMC genomics 7 (1), 126, 2006
942006
Visualization for genomics: the microbial genome viewer
R Kerkhoven, FHJ Van Enckevort, J Boekhorst, D Molenaar, RJ Siezen
Bioinformatics 20 (11), 1812-1814, 2004
942004
Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being …
CCGM Booijink, J Boekhorst, EG Zoetendal, H Smidt, M Kleerebezem, ...
Appl. Environ. Microbiol. 76 (16), 5533-5540, 2010
912010
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Articles 1–20