Jos Boekhorst
Jos Boekhorst
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Complete genome sequence of Lactobacillus plantarum WCFS1
M Kleerebezem, J Boekhorst, R van Kranenburg, D Molenaar, OP Kuipers, ...
Proceedings of the National Academy of Sciences 100 (4), 1990-1995, 2003
Iron fortification adversely affects the gut microbiome, increases pathogen abundance and induces intestinal inflammation in Kenyan infants
T Jaeggi, GAM Kortman, D Moretti, C Chassard, P Holding, A Dostal, ...
Gut 64 (5), 731-742, 2015
Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?
WG Touw, JR Bayjanov, L Overmars, L Backus, J Boekhorst, M Wels, ...
Briefings in bioinformatics 14 (3), 315-326, 2013
Degenerate target sites mediate rapid primed CRISPR adaptation
PC Fineran, MJH Gerritzen, M Suárez-Diez, T Künne, J Boekhorst, ...
Proceedings of the National Academy of Sciences 111 (16), E1629-E1638, 2014
Flavour formation from amino acids by lactic acid bacteria: predictions from genome sequence analysis
R van Kranenburg, M Kleerebezem, J van Hylckama Vlieg, BM Ursing, ...
International Dairy Journal 12 (2-3), 111-121, 2002
Pyrosequencing-based comparative genome analysis of the nosocomial pathogen Enterococcus faecium and identification of a large transferable pathogenicity island
W van Schaik, J Top, DR Riley, J Boekhorst, JEP Vrijenhoek, ...
BMC genomics 11 (1), 1-18, 2010
Microbiome dynamics of human epidermis following skin barrier disruption
PLJM Zeeuwen, J Boekhorst, EH van den Bogaard, HD de Koning, ...
Genome biology 13 (11), 1-18, 2012
Comparative analysis of proteins with a mucus-binding domain found exclusively in lactic acid bacteria
J Boekhorst, Q Helmer, M Kleerebezem, RJ Siezen
Microbiology 152 (1), 273-280, 2006
In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling
PJ Boersema, LY Foong, VMY Ding, S Lemeer, B van Breukelen, R Philp, ...
Molecular & Cellular Proteomics 9 (1), 84-99, 2010
Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs
J Boekhorst, MWHJ de Been, M Kleerebezem, RJ Siezen
Journal of bacteriology 187 (14), 4928-4934, 2005
LocateP: genome-scale subcellular-location predictor for bacterial proteins
M Zhou, J Boekhorst, C Francke, RJ Siezen
BMC bioinformatics 9 (1), 1-17, 2008
The predicted secretome of Lactobacillus plantarum WCFS1 sheds light on interactions with its environment
J Boekhorst, M Wels, M Kleerebezem, RJ Siezen
Microbiology 152 (11), 3175-3183, 2006
Gut microbiome in ADHD and its relation to neural reward anticipation
E Aarts, THA Ederveen, J Naaijen, MP Zwiers, J Boekhorst, ...
PloS one 12 (9), e0183509, 2017
Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome
RJ Siezen, C Francke, B Renckens, J Boekhorst, M Wels, M Kleerebezem, ...
Journal of bacteriology 194 (1), 195-196, 2012
Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome
RJ Siezen, C Francke, B Renckens, J Boekhorst, M Wels, M Kleerebezem, ...
Journal of bacteriology 194 (1), 195-196, 2012
The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content
J Boekhorst, RJ Siezen, MC Zwahlen, D Vilanova, RD Pridmore, ...
Microbiology 150 (11), 3601-3611, 2004
Lactobacillus paracasei Comparative Genomics: Towards Species Pan-Genome Definition and Exploitation of Diversity
T Smokvina, M Wels, J Polka, C Chervaux, S Brisse, J Boekhorst, ...
PloS one 8 (7), e68731, 2013
Genome-Scale Genotype-Phenotype Matching of Two Lactococcus lactis Isolates from Plants Identifies Mechanisms of Adaptation to the Plant Niche
RJ Siezen, MJC Starrenburg, J Boekhorst, B Renckens, D Molenaar, ...
Applied and environmental microbiology 74 (2), 424-436, 2008
Comparative genomics of prevaccination and modern Bordetella pertussis strains
MJ Bart, M van Gent, HGJ van der Heide, J Boekhorst, P Hermans, ...
BMC genomics 11 (1), 1-10, 2010
A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets
MM Leimena, J Ramiro-Garcia, M Davids, B van den Bogert, H Smidt, ...
BMC genomics 14 (1), 1-14, 2013
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