| On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics TV Pham, SR Piersma, M Warmoes, CR Jimenez Bioinformatics 26 (3), 363-369, 2010 | 194 | 2010 |
| Proteomic analysis of cerebrospinal fluid extracellular vesicles: A comprehensive dataset D Chiasserini, JRT van Weering, SR Piersma, TV Pham, A Malekzadeh, ... Journal of proteomics 106, 191-204, 2014 | 188 | 2014 |
| Workflow comparison for label-free, quantitative secretome proteomics for cancer biomarker discovery: method evaluation, differential analysis, and verification in serum SR Piersma, U Fiedler, S Span, A Lingnau, TV Pham, S Hoffmann, ... Journal of proteome research 9 (4), 1913-1922, 2010 | 170 | 2010 |
| Proteomic profiling of Mycobacterium tuberculosis identifies nutrient-starvation-responsive toxin–antitoxin systems J Albrethsen, J Agner, SR Piersma, P Højrup, TV Pham, K Weldingh, ... Molecular & Cellular Proteomics 12 (5), 1180-1191, 2013 | 124 | 2013 |
| Comparative proteomics of colon cancer stem cells and differentiated tumor cells identifies BIRC6 as a potential therapeutic target WJ Van Houdt, BL Emmink, TV Pham, SR Piersma, A Verheem, RG Vries, ... Molecular & Cellular Proteomics 10 (12), 2011 | 92 | 2011 |
| Colorectal cancer candidate biomarkers identified by tissue secretome proteome profiling M de Wit, H Kant, SR Piersma, TV Pham, S Mongera, M van Berkel, ... Journal of proteomics 99, 26-39, 2014 | 83 | 2014 |
| Face detection by aggregated Bayesian network classifiers TV Pham, M Worring, AWM Smeulders Pattern Recognition Letters 23 (4), 451-461, 2002 | 81 | 2002 |
| Comparative protein profiling reveals minichromosome maintenance (MCM) proteins as novel potential tumor markers for meningiomas O Saydam, O Senol, TBM Schaaij-Visser, TV Pham, SR Piersma, ... Journal of proteome research 9 (1), 485-494, 2010 | 79 | 2010 |
| Sub-nuclear proteomics in colorectal cancer: Identification of proteins enriched in the nuclear matrix fraction and regulation in adenoma to carcinoma progression J Albrethsen, JC Knol, S Piersma, TV Pham, M de Wit, S Mongera, ... Molecular & Cellular Proteomics, 2010 | 78 | 2010 |
| The secretome of colon cancer stem cells contains drug-metabolizing enzymes BL Emmink, A Verheem, WJ Van Houdt, EJA Steller, KM Govaert, ... Journal of proteomics 91, 84-96, 2013 | 76 | 2013 |
| iTRAQ-based proteomics profiling reveals increased metabolic activity and cellular cross-talk in angiogenic compared with invasive glioblastoma phenotype U Rajcevic, K Petersen, JC Knol, M Loos, S Bougnaud, O Klychnikov, ... Molecular & Cellular Proteomics 8 (11), 2595-2612, 2009 | 67 | 2009 |
| Decoration of outer membrane vesicles with multiple antigens by using an autotransporter approach MH Daleke-Schermerhorn, T Felix, Z Soprova, M Corinne, D Vikström, ... Applied and environmental microbiology 80 (18), 5854-5865, 2014 | 64 | 2014 |
| Exosomes secreted by apoptosis-resistant acute myeloid leukemia (AML) blasts harbor regulatory network proteins potentially involved in antagonism of apoptosis A Wojtuszkiewicz, GJ Schuurhuis, FL Kessler, SR Piersma, JC Knol, ... Molecular & Cellular Proteomics 15 (4), 1281-1298, 2016 | 63 | 2016 |
| Proximal fluid proteome profiling of mouse colon tumors reveals biomarkers for early diagnosis of human colorectal cancer RJA Fijneman, M de Wit, M Pourghiasian, SR Piersma, TV Pham, ... Clinical Cancer Research 18 (9), 2613-2624, 2012 | 61 | 2012 |
| MicroRNA-124 and-137 cooperativity controls caspase-3 activity through BCL2L13 in hippocampal neural stem cells M Schouten, SA Fratantoni, CJ Hubens, SR Piersma, TV Pham, ... Scientific reports 5 (1), 1-17, 2015 | 59 | 2015 |
| Novel diagnostic cerebrospinal fluid biomarkers for pathologic subtypes of frontotemporal dementia identified by proteomics CE Teunissen, N Elias, MJA Koel-Simmelink, S Durieux-Lu, ... Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring 2, 86-94, 2016 | 58 | 2016 |
| An accurate paired sample test for count data TV Pham, CR Jimenez Bioinformatics 28 (18), i596-i602, 2012 | 53 | 2012 |
| Label-free mass spectrometry-based proteomics for biomarker discovery and validation TV Pham, SR Piersma, G Oudgenoeg, CR Jimenez Expert Review of Molecular Diagnostics 12 (4), 343-359, 2012 | 53 | 2012 |
| Identification of biomarkers for diagnosis and progression of MS by MALDI-TOF mass spectrometry CE Teunissen, MJA Koel-Simmelink, TV Pham, JC Knol, M Khalil, ... Multiple Sclerosis Journal 17 (7), 838-850, 2011 | 51 | 2011 |
| The proteome of the locus ceruleus in Parkinson's disease: relevance to pathogenesis KD van Dijk, HW Berendse, B Drukarch, SA Fratantoni, TV Pham, ... Brain Pathology 22 (4), 485-498, 2012 | 49 | 2012 |
Connie JimenezProfessor of Translational OncoProteomicsVerified email at vumc.nl
