Martina Kutmon

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Chris EveloHead Department of Bioinformatics - BiGCaT, Maastricht University ORCID:0000-0002-5301-3142Verified email at maastrichtuniversity.nl
Egon WillighagenTGX, NUTRIM, Maastricht University/NL, ORCID:0000-0001-7542-0286, https://social.edu.nl/@egonwVerified email at maastrichtuniversity.nl
Andra WaagmeesterMicelio bvbaVerified email at micelio.be
Dr. Susan Steinbusch-CoortAssociate Professor, dept of Bionformatics-BiGCaT, NUTRIM, Maastricht University, NLVerified email at maastrichtuniversity.nl
Alexander R PicoGladstone InstitutesVerified email at gladstone.ucsf.edu
Friederike EhrhartAssistant professor, Maastricht UniversityVerified email at maastrichtuniversity.nl
Kristina HanspersGladstone InstitutesVerified email at gladstone.ucsf.edu
Lars EijssenMaastricht UniversityVerified email at maastrichtuniversity.nl
Anders RiuttaInstitute for Data Science and Biotechnology, Gladstone InstitutesVerified email at andersriutta.com
Ryan A. MillerMaastricht UniversityVerified email at maastrichtuniversity.nl
Denise SlenterPostDoctoral Researcher, Translational Genomics, Maastricht UniversityVerified email at maastrichtuniversity.nl
Elisa CirilloVerified email at maastrichtuniversity.nl
Marvin MartensPostDoctoral Researcher, Maastricht UniversityVerified email at maastrichtuniversity.nl
Anwesha Bohler (née Dutta)Program Manager, AmazonVerified email at amazon.com
Michiel AdriaensAssistant Professor, Maastricht Centre for Systems Biology - MaCSBioVerified email at maastrichtuniversity.nl
Thomas KelderCTO, EdgeLeap, The NetherlandsVerified email at edgeleap.com
Samar Hayat Khan TareenHoffmann-La Roche LimitedVerified email at roche.com
Bruce ConklinInvestigator Gladstone and Professor at UCSFVerified email at gladstone.ucsf.edu
Sabine DaemenPostdoc, Maastricht UniversityVerified email at wustl.edu
Milka Sokolović, PhDDirector General, European Public Health AllianceVerified email at epha.org

Martina Kutmon

Assistant professor, Maastricht University, The Netherlands

Verified email at maastrichtuniversity.nl

Bioinformatics Systems Biology Pathway Analysis Network Biology Data Visualization


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WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research DN Slenter, M Kutmon, K Hanspers, A Riutta, J Windsor, N Nunes, ... Nucleic acids research 46 (D1), D661-D667, 2018	953	2018
The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010	815	2010
WikiPathways: connecting communities M Martens, A Ammar, A Riutta, A Waagmeester, DN Slenter, K Hanspers, ... Nucleic acids research 49 (D1), D613-D621, 2021	695	2021
WikiPathways: building research communities on biological pathways T Kelder, MP Van Iersel, K Hanspers, M Kutmon, BR Conklin, CT Evelo, ... Nucleic acids research 40 (D1), D1301-D1307, 2012	643	2012
WikiPathways: capturing the full diversity of pathway knowledge M Kutmon, A Riutta, N Nunes, K Hanspers, EL Willighagen, A Bohler, ... Nucleic acids research 44 (D1), D488-D494, 2016	504	2016
PathVisio 3: an extendable pathway analysis toolbox M Kutmon, MP van Iersel, A Bohler, T Kelder, N Nunes, AR Pico, CT Evelo PLoS computational biology 11 (2), e1004085, 2015	493	2015
Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310-318, 2016	258	2016
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020	238	2020
CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis M Kutmon, T Kelder, P Mandaviya, CTA Evelo, SL Coort PloS one 8 (12), e82160, 2013	147	2013
WikiPathways 2024: next generation pathway database A Agrawal, H Balcı, K Hanspers, SL Coort, M Martens, DN Slenter, ... Nucleic acids research 52 (D1), D679-D689, 2024	96	2024
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021	90	2021
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization M Kutmon, S Lotia, CT Evelo, AR Pico F1000Research 3, 2014	79	2014
A pathway approach to investigate the function and regulation of SREBPs S Daemen, M Kutmon, CT Evelo Genes & nutrition 8, 289-300, 2013	76	2013
From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results E Cirillo, M Kutmon, M Gonzalez Hernandez, T Hooimeijer, ME Adriaens, ... PloS one 13 (4), e0193515, 2018	60	2018
Using the semantic web for rapid integration of WikiPathways with other biological online data resources A Waagmeester, M Kutmon, A Riutta, R Miller, EL Willighagen, CT Evelo, ... PLoS computational biology 12 (6), e1004989, 2016	57	2016
Integrative multiomics analysis of human atherosclerosis reveals a serum response factor‐driven network associated with intraplaque hemorrhage H Jin, P Goossens, P Juhasz, W Eijgelaar, M Manca, JMH Karel, ... Clinical and translational medicine 11 (6), e458, 2021	50	2021
Reactome from a WikiPathways perspective A Bohler, G Wu, M Kutmon, LA Pradhana, SL Coort, K Hanspers, R Haw, ... PLoS computational biology 12 (5), e1004941, 2016	48	2016
Guiding the choice of informatics software and tools for lipidomics research applications Z Ni, M Wölk, G Jukes, K Mendivelso Espinosa, R Ahrends, L Aimo, ... Nature methods 20 (2), 193-204, 2023	44	2023
CyTargetLinker app update: A flexible solution for network extension in Cytoscape M Kutmon, F Ehrhart, EL Willighagen, CT Evelo, SL Coort F1000Research 7, ELIXIR-743, 2019	38	2019
Visualizing the regulatory role of Angiopoietin-like protein 8 (ANGPTL8) in glucose and lipid metabolic pathways A Siddiqa, E Cirillo, SHK Tareen, A Ali, M Kutmon, LMT Eijssen, J Ahmad, ... Genomics 109 (5-6), 408-418, 2017	36	2017

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