| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature, 2012 | 17015 | 2012 |
| Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ... Science 330 (6012), 1775-1787, 2010 | 1134 | 2010 |
| A user’s guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS Biol 9 (4), e1001046, 2011 | 867 | 2011 |
| Divergent lncRNAs regulate gene expression and lineage differentiation in pluripotent cells S Luo, JY Lu, L Liu, Y Yin, C Chen, X Han, B Wu, R Xu, W Liu, P Yan, ... Cell stem cell 18 (5), 637-652, 2016 | 397 | 2016 |
| Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014 | 336 | 2014 |
| Characterization of Stress‐responsive lncRNAs in Arabidopsis thaliana by Integrating Expression, Epigenetic and Structural Features C Di, J Yuan, Y Wu, J Li, H Lin, L Hu, T Zhang, Y Qi, MB Gerstein, Y Guo, ... The Plant Journal, 2014 | 308 | 2014 |
| Recurrently deregulated lncRNAs in hepatocellular carcinoma Y Yang, L Chen, J Gu, H Zhang, J Yuan, Q Lian, G Lv, S Wang, Y Wu, ... Nature communications 8 (1), 14421, 2017 | 301 | 2017 |
| Pervasive chromatin-RNA binding protein interactions enable RNA-based regulation of transcription R Xiao, JY Chen, Z Liang, D Luo, G Chen, ZJ Lu, Y Chen, B Zhou, H Li, ... Cell 178 (1), 107-121. e18, 2019 | 280 | 2019 |
| Improved RNA secondary structure prediction by maximizing expected pair accuracy ZJ Lu, JW Gloor, DH Mathews Rna 15 (10), 1805-1813, 2009 | 265 | 2009 |
| Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans W Niu, ZJ Lu, M Zhong, M Sarov, JI Murray, CM Brdlik, J Janette, C Chen, ... Genome research 21 (2), 245-254, 2011 | 264 | 2011 |
| CLIPdb: a CLIP-seq database for protein-RNA interactions YCT Yang, C Di, B Hu, M Zhou, Y Liu, N Song, Y Li, J Umetsu, ZJ Lu BMC genomics 16, 1-8, 2015 | 231 | 2015 |
| Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response M Zhong, W Niu, ZJ Lu, M Sarov, JI Murray, J Janette, D Raha, ... PLoS genetics 6 (2), e1000848, 2010 | 218 | 2010 |
| Microarray is an efficient tool for circRNA profiling S Li, S Teng, J Xu, G Su, Y Zhang, J Zhao, S Zhang, H Wang, W Qin, ... Briefings in bioinformatics 20 (4), 1420-1433, 2019 | 184 | 2019 |
| Efficient siRNA selection using hybridization thermodynamics ZJ Lu, DH Mathews Nucleic acids research 36 (2), 640-647, 2008 | 168 | 2008 |
| Critical roles of long noncoding RNAs in Drosophila spermatogenesis K Wen, L Yang, T Xiong, C Di, D Ma, M Wu, Z Xue, X Zhang, L Li, ... Genome Research 26 (9), 1233-1244, 2016 | 159 | 2016 |
| RNA biomarkers: frontier of precision medicine for cancer X Xi, T Li, Y Huang, J Sun, Y Zhu, Y Yang, ZJ Lu Non-coding RNA 3 (1), 9, 2017 | 156 | 2017 |
| A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation ZJ Lu, DH Turner, DH Mathews Nucleic acids research 34 (17), 4912-4924, 2006 | 151 | 2006 |
| POSTAR2: deciphering the post-transcriptional regulatory logics Y Zhu, G Xu, YT Yang, Z Xu, X Chen, B Shi, D Xie, ZJ Lu, P Wang Nucleic acids research 47 (D1), D203-D211, 2019 | 149 | 2019 |
| Systematic identification of synergistic drug pairs targeting HIV X Tan, L Hu, LJ Luquette III, G Gao, Y Liu, H Qu, R Xi, ZJ Lu, PJ Park, ... Nature Biotechnology, 2012 | 145 | 2012 |
| COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features L Hu, Z Xu, B Hu, ZJ Lu Nucleic acids research 45 (1), e2-e2, 2017 | 123 | 2017 |
Yucheng T. YangAssociate Professor, Fudan UniversityVerified email at fudan.edu.cn
