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Daan H. de Groot
Daan H. de Groot
Postdoc Computational Systems Biology, Biozentrum, Universitaet Basel
Verified email at unibas.ch
Title
Cited by
Cited by
Year
In vivo characterisation of fluorescent proteins in budding yeast
D Botman, DH de Groot, P Schmidt, J Goedhart, B Teusink
Scientific reports 9 (1), 2234, 2019
732019
The common message of constraint-based optimization approaches: overflow metabolism is caused by two growth-limiting constraints
DH De Groot, J Lischke, R Muolo, R Planqué, FJ Bruggeman, B Teusink
Cellular and Molecular Life Sciences 77, 441-453, 2020
632020
Metabolic control of nitrogen fixation in rhizobium-legume symbioses
CCM Schulte, K Borah, RM Wheatley, JJ Terpolilli, G Saalbach, N Crang, ...
Science advances 7 (31), eabh2433, 2021
532021
The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates
DH De Groot, C Van Boxtel, R Planqué, FJ Bruggeman, B Teusink
PLOS Computational Biology 15 (3), e1006858, 2019
43*2019
Elementary Growth Modes provide a molecular description of cellular self-fabrication
DH de Groot, J Hulshof, B Teusink, FJ Bruggeman, R Planqué
PLoS computational biology 16 (1), e1007559, 2020
262020
Unlocking elementary conversion modes: Ecmtool unveils all capabilities of metabolic networks
TJ Clement, EB Baalhuis, B Teusink, FJ Bruggeman, R Planqué, ...
Patterns 2 (1), 2021
132021
Population dynamics of microbial cross-feeding are determined by co-localization probabilities and cooperation-independent cheater growth
RJ van Tatenhove-Pel, DH de Groot, AS Bisseswar, B Teusink, ...
The ISME Journal 15 (10), 3050-3061, 2021
112021
Effective bet-hedging through growth rate dependent stability
DH de Groot, AJ Tjalma, FJ Bruggeman, E van Nimwegen
Proceedings of the National Academy of Sciences 120 (8), e2211091120, 2023
82023
Understanding FBA solutions under multiple nutrient limitations
E van Pelt-KleinJan, DH de Groot, B Teusink
Metabolites 11 (5), 257, 2021
72021
Metabolic control of nitrogen fixation in rhizobium-legume symbioses. Sci Adv 7: eabh2433
CCM Schulte, K Borah, RM Wheatley, JJ Terpolilli, G Saalbach, N Crang, ...
52021
ecmtool: fast and memory-efficient enumeration of elementary conversion modes
B Buchner, TJ Clement, DH de Groot, J Zanghellini
Bioinformatics 39 (3), btad095, 2023
32023
Metabolic constraints on nitrogen fixation by rhizobia in legume nodules
CCM Schulte, K Borah, RM Wheatley, JJ Terpolilli, G Saalbach, N Crang, ...
bioRxiv, 2021.02. 16.431433, 2021
22021
Growth consequences of the inhomogeneous organization of the bacterial cytoplasm
JH van Heerden, AM Berkvens, DH de Groot, FJ Bruggeman
bioRxiv, 2023.04. 18.537336, 2023
12023
Coupling phenotype stability to growth rate overcomes limitations of bet-hedging strategies
DH de Groot, AJ Tjalma, FJ Bruggeman, E van Nimwegen
BioRxiv, 2022.04. 12.488059, 2022
12022
Cell fate determination by Lamarckian molecule-inheritance and chance
FJ Bruggeman, J Schouten, DH de Groot, R Planqué
bioRxiv, 618199, 2019
12019
Optimal metabolic fluxes in constraint-based models
D de Groot, D Tourigny, F Scott, JP Dapprich
Optimal solutions of constraint-based metabolic models
D de Groot, D Tourigny, F Scott
The space of metabolic flux distributions
D de Groot, D Tourigny, F Scott
The enrichment of cross-feeding microorganisms in spatially structured environments is affected by cooperation-independent growth
RJ van Tatenhove-Pel, DH de Groot, AS Bisseswar, EM van der Ark-Vonk, ...
VU Research Portal, 179, 0
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Articles 1–19