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Daan H. de Groot
Daan H. de Groot
Postdoc Computational Systems Biology, Biozentrum, Universitaet Basel
Geverifieerd e-mailadres voor unibas.ch
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In vivo characterisation of fluorescent proteins in budding yeast
D Botman, DH de Groot, P Schmidt, J Goedhart, B Teusink
Scientific reports 9 (1), 2234, 2019
752019
The common message of constraint-based optimization approaches: overflow metabolism is caused by two growth-limiting constraints
DH De Groot, J Lischke, R Muolo, R Planqué, FJ Bruggeman, B Teusink
Cellular and Molecular Life Sciences 77, 441-453, 2020
652020
Metabolic control of nitrogen fixation in rhizobium-legume symbioses
CCM Schulte, K Borah, RM Wheatley, JJ Terpolilli, G Saalbach, N Crang, ...
Science advances 7 (31), eabh2433, 2021
542021
The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates
DH De Groot, C Van Boxtel, R Planqué, FJ Bruggeman, B Teusink
PLOS Computational Biology 15 (3), e1006858, 2019
43*2019
Elementary Growth Modes provide a molecular description of cellular self-fabrication
DH de Groot, J Hulshof, B Teusink, FJ Bruggeman, R Planqué
PLoS computational biology 16 (1), e1007559, 2020
272020
Unlocking elementary conversion modes: Ecmtool unveils all capabilities of metabolic networks
TJ Clement, EB Baalhuis, B Teusink, FJ Bruggeman, R Planqué, ...
Patterns 2 (1), 2021
132021
Population dynamics of microbial cross-feeding are determined by co-localization probabilities and cooperation-independent cheater growth
RJ van Tatenhove-Pel, DH de Groot, AS Bisseswar, B Teusink, ...
The ISME Journal 15 (10), 3050-3061, 2021
112021
Effective bet-hedging through growth rate dependent stability
DH de Groot, AJ Tjalma, FJ Bruggeman, E van Nimwegen
Proceedings of the National Academy of Sciences 120 (8), e2211091120, 2023
92023
Understanding FBA solutions under multiple nutrient limitations
E van Pelt-KleinJan, DH de Groot, B Teusink
Metabolites 11 (5), 257, 2021
72021
Metabolic control of nitrogen fixation in rhizobium-legume symbioses. Sci Adv 7: eabh2433
CCM Schulte, K Borah, RM Wheatley, JJ Terpolilli, G Saalbach, N Crang, ...
52021
ecmtool: fast and memory-efficient enumeration of elementary conversion modes
B Buchner, TJ Clement, DH de Groot, J Zanghellini
Bioinformatics 39 (3), btad095, 2023
32023
Metabolic constraints on nitrogen fixation by rhizobia in legume nodules
CCM Schulte, K Borah, RM Wheatley, JJ Terpolilli, G Saalbach, N Crang, ...
bioRxiv, 2021.02. 16.431433, 2021
22021
Growth consequences of the inhomogeneous organization of the bacterial cytoplasm
JH van Heerden, A Berkvens, DH de Groot, FJ Bruggeman
bioRxiv, 2023.04. 18.537336, 2023
12023
Coupling phenotype stability to growth rate overcomes limitations of bet-hedging strategies
DH de Groot, AJ Tjalma, FJ Bruggeman, E van Nimwegen
BioRxiv, 2022.04. 12.488059, 2022
12022
Cell fate determination by Lamarckian molecule-inheritance and chance
FJ Bruggeman, J Schouten, DH de Groot, R Planqué
bioRxiv, 618199, 2019
12019
Optimal metabolic fluxes in constraint-based models
D de Groot, D Tourigny, F Scott, JP Dapprich
Optimal solutions of constraint-based metabolic models
D de Groot, D Tourigny, F Scott
The space of metabolic flux distributions
D de Groot, D Tourigny, F Scott
The enrichment of cross-feeding microorganisms in spatially structured environments is affected by cooperation-independent growth
RJ van Tatenhove-Pel, DH de Groot, AS Bisseswar, EM van der Ark-Vonk, ...
VU Research Portal, 179, 0
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Artikelen 1–19