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Ricardo De Matos Simoes
Ricardo De Matos Simoes
Dana Farber Cancer Institute
Geverifieerd e-mailadres voor dfci.harvard.edu
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Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection
SJF Cronin, NT Nehme, S Limmer, S Liegeois, JA Pospisilik, D Schramek, ...
Science 325 (5938), 340-343, 2009
3582009
A Mek1–Mek2 heterodimer determines the strength and duration of the Erk signal
F Catalanotti, G Reyes, V Jesenberger, G Galabova-Kovacs, ...
Nature structural & molecular biology 16 (3), 294-303, 2009
2172009
An embryonic diapause-like adaptation with suppressed Myc activity enables tumor treatment persistence
E Dhimolea, R de Matos Simoes, D Kansara, A Al’Khafaji, J Bouyssou, ...
Cancer cell 39 (2), 240-256. e11, 2021
1592021
Statistical inference and reverse engineering of gene regulatory networks from observational expression data
F Emmert-Streib, G Glazko, R De Matos Simoes
Frontiers in genetics 3, 20502, 2012
1502012
A consistent phylogenetic backbone for the fungi
I Ebersberger, R de Matos Simoes, A Kupczok, M Gube, E Kothe, K Voigt, ...
Molecular Biology and Evolution 29 (5), 1319-1334, 2012
1472012
Bagging statistical network inference from large-scale gene expression data
R de Matos Simoes, F Emmert-Streib
PloS one 7 (3), e33624, 2012
1352012
The gene regulatory network for breast cancer: integrated regulatory landscape of cancer hallmarks
F Emmert-Streib, R de Matos Simoes, P Mullan, B Haibe-Kains, ...
Frontiers in genetics 5, 77923, 2014
832014
Functional genomics identify distinct and overlapping genes mediating resistance to different classes of heterobifunctional degraders of oncoproteins
R Shirasaki, GM Matthews, S Gandolfi, R de Matos Simoes, DL Buckley, ...
Cell Reports 34 (1), 2021
582021
NF-κB dysregulation in multiple myeloma
GM Matthews, R de Matos Simoes, E Dhimolea, M Sheffer, S Gandolfi, ...
Seminars in cancer biology 39, 68-76, 2016
552016
Genome-scale screens identify factors regulating tumor cell responses to natural killer cells
M Sheffer, E Lowry, N Beelen, M Borah, SNA Amara, CC Mader, JA Roth, ...
Nature Genetics 53 (8), 1196-1206, 2021
532021
The human disease network: Opportunities for classification, diagnosis, and prediction of disorders and disease genes
F Emmert-Streib, S Tripathi, RM Simoes, AF Hawwa, M Dehmer
Systems Biomedicine 1 (1), 20-28, 2013
482013
Autophagy suppresses Ras-driven epithelial tumourigenesis by limiting the accumulation of reactive oxygen species
J Manent, S Banerjee, R de Matos Simoes, T Zoranovic, C Mitsiades, ...
Oncogene 36 (40), 5576-5592, 2017
432017
Functional and genetic analysis of the colon cancer network
F Emmert-Streib, R de Matos Simoes, G Glazko, S McDade, ...
BMC bioinformatics 15, 1-15, 2014
432014
Influence of statistical estimators of mutual information and data heterogeneity on the inference of gene regulatory networks
R de Matos Simoes, F Emmert-Streib
PLoS One 6 (12), e29279, 2011
412011
Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information
R Matos Simoes, M Dehmer, F Emmert-Streib
BMC genomics 14, 1-23, 2013
392013
A BRCA1 deficient, NFκB driven immune signal predicts good outcome in triple negative breast cancer
NE Buckley, P Haddock, RDM Simoes, E Parkes, G Irwin, F Emmert-Streib, ...
Oncotarget 7 (15), 19884, 2016
342016
Assessment of Nuclear ZEB2 as a Biomarker for Colorectal Cancer Outcome and TNM Risk Stratification
R Sreekumar, S Harris, K Moutasim, R de Matos Simoes, A Patel, K Emo, ...
JAMA Network Open 1 ((6), e183115), 2018
292018
Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data
R Matos Simoes, S Dalleau, KE Williamson, F Emmert-Streib
BMC systems biology 9, 1-19, 2015
292015
Harnessing the complexity of gene expression data from cancer: from single gene to structural pathway methods
F Emmert-Streib, S Tripathi, R Matos Simoes
Biology direct 7, 1-25, 2012
282012
B-cell lymphoma gene regulatory networks: biological consistency among inference methods
R de Matos Simoes, M Dehmer, F Emmert-Streib
Frontiers in genetics 4, 70657, 2013
272013
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Artikelen 1–20