| Structure-based protein function prediction using graph convolutional networks V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ... Nature Communications 12 (1), 1-14, 2021 | 679 | 2021 |
| Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature Methods, 1-14, 2020 | 670 | 2020 |
| Expanding the utility of NMR restraints with paramagnetic compounds: background and practical aspects J Koehler, J Meiler Progress in nuclear magnetic resonance spectroscopy 59 (4), 360-389, 2011 | 214 | 2011 |
| An integrated framework advancing membrane protein modeling and design RF Alford, JK Leman, BD Weitzner, AM Duran, DC Tilley, A Elazar, ... PLoS Comput Biol 11 (9), e1004398, 2015 | 176 | 2015 |
| Computational modeling of membrane proteins J Koehler Leman, MB Ulmschneider, JJ Gray Proteins: Structure, Function, and Bioinformatics 83 (1), 1-24, 2015 | 124 | 2015 |
| Simultaneous prediction of protein secondary structure and transmembrane spans JK Leman, R Mueller, M Karakas, N Woetzel, J Meiler Proteins: Structure, Function, and Bioinformatics 81 (7), 1127-1140, 2013 | 84 | 2013 |
| A unified hydrophobicity scale for multispan membrane proteins J Koehler, N Woetzel, R Staritzbichler, CR Sanders, J Meiler Proteins: Structure, Function, and Bioinformatics 76 (1), 13-29, 2009 | 67 | 2009 |
| Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework G Glusman, PW Rose, A Prlić, J Dougherty, JM Duarte, AS Hoffman, ... Genome medicine 9, 1-10, 2017 | 61 | 2017 |
| Specificity and Speed: Tethered Photopharmacology P Leippe, J Koehler Leman, D Trauner Biochemistry 56 (39), 5214-5220, 2017 | 49 | 2017 |
| Structural Model of the Membrane‐Bound C Terminus of Lipid‐Modified Human N‐Ras Protein G Reuther, KT Tan, J Köhler, C Nowak, A Pampel, K Arnold, J Kuhlmann, ... Angewandte Chemie International Edition 45 (32), 5387-5390, 2006 | 49 | 2006 |
| Protein remote homology detection and structural alignment using deep learning T Hamamsy, JT Morton, R Blackwell, D Berenberg, N Carriero, ... Nature Biotechnology, 1-11, 2023 | 46 | 2023 |
| Expanding the toolkit for membrane protein modeling in Rosetta J Koehler Leman, BK Mueller, JJ Gray Bioinformatics 33 (5), 754-756, 2016 | 43 | 2016 |
| Lysophospholipid micelles sustain the stability and catalytic activity of diacylglycerol kinase in the absence of lipids J Koehler, ES Sulistijo, M Sakakura, HJ Kim, CD Ellis, CR Sanders Biochemistry 49 (33), 7089-7099, 2010 | 43 | 2010 |
| Computational prediction of the heterodimeric and higher-order structure of gpE1/gpE2 envelope glycoproteins encoded by hepatitis C virus H Freedman, MR Logan, D Hockman, J Koehler Leman, JLM Law, ... Journal of virology 91 (8), e02309-16, 2017 | 42 | 2017 |
| Sequence-structure-function relationships in the microbial protein universe J Koehler Leman, P Szczerbiak, PD Renfrew, V Gligorijevic, D Berenberg, ... Nature Communications 14 (1), 2351, 2023 | 40 | 2023 |
| Better together: Elements of successful scientific software development in a distributed collaborative community J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ... PLOS Computational Biology 16 (5), e1007507, 2020 | 35 | 2020 |
| Improving loop modeling of the antibody complementarity-determining region 3 using knowledge-based restraints JA Finn, J Koehler Leman, JR Willis, A Cisneros III, JE Crowe Jr, J Meiler PloS one 11 (5), e0154811, 2016 | 32 | 2016 |
| Capturing conformational states in proteins using sparse paramagnetic NMR data KB Pilla, JK Leman, G Otting, T Huber PLoS One 10 (5), e0127053, 2015 | 31 | 2015 |
| Integrative protein modeling in RosettaNMR from sparse paramagnetic restraints G Kuenze, R Bonneau, JK Leman, J Meiler Structure 27 (11), 1721-1734. e5, 2019 | 27 | 2019 |
| Computing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP JK Leman, S Lyskov, R Bonneau BMC bioinformatics 18 (1), 115, 2017 | 26 | 2017 |
Jens MeilerVanderbilt University & University LeipzigVerified email at meilerlab.org
