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Justin J.J. van der Hooft
Justin J.J. van der Hooft
Assistant Professor Computational Metabolomics @ WUR
Verified email at wur.nl - Homepage
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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (9), 1091-1091, 2019
13261*2019
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
132572019
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints 6, e27295v2, 2018
9262018
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature Methods 17 (9), 905-908, 2020
7952020
MIBiG 2.0: a repository for biosynthetic gene clusters of known function
SA Kautsar, K Blin, S Shaw, JC Navarro-Muñoz, BR Terlouw, ...
Nucleic acids research 48 (D1), D454-D458, 2020
5642020
The food metabolome: a window over dietary exposure
A Scalbert, L Brennan, C Manach, C Andres-Lacueva, LO Dragsted, ...
American Journal of Clinical Nutrition, Online first, 2014
5042014
Reproducible Molecular Networking Of Untargeted Mass Spectrometry Data Using GNPS.
AT Aron, E Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ...
ChemRxiv, 2019
4072019
Topic modeling for untargeted substructure exploration in metabolomics
JJJ van der Hooft, J Wandy, MP Barrett, KEV Burgess, S Rogers
Proceedings of the National Academy of Sciences of the United States of …, 2016
3292016
The natural products atlas: an open access knowledge base for microbial natural products discovery
JA Van Santen, G Jacob, AL Singh, V Aniebok, MJ Balunas, D Bunsko, ...
ACS Central Science 5 (11), 1824-1833, 2019
3072019
MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools
M Ernst, KB Kang, AM Caraballo-Rodriguez, LF Nothias, J Wandy, ...
Metabolites, 2019
3042019
Propagating annotations of molecular networks using in silico fragmentation
RR da Silva, M Wang, LF Nothias, JJJ van der Hooft, ...
PLoS computational biology 14 (4), e1006089, 2018
2902018
Human studies on the absorption, distribution, metabolism, and excretion of tea polyphenols
MN Clifford, JJJ van der Hooft, A Crozier
The American journal of clinical nutrition 98 (6), 1619S-1630S, 2013
2552013
Accelerating metabolite identification in natural product research: toward an ideal combination of LC-HRMS/MS and NMR profiling, in silico databases and chemometrics
JL Wolfender, JM Nuzillard, JJJ van der Hooft, JH Renault, S Bertrand
Analytical Chemistry, 2018
221*2018
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
1822020
Orange juice (poly) phenols are highly bioavailable in humans
G Pereira-Caro, G Borges, J van der Hooft, MN Clifford, D Del Rio, ...
The American Journal of Clinical Nutrition 100 (5), 1378-1384, 2014
1652014
Absorption, metabolism, distribution and excretion of (−)-epicatechin: A review of recent findings
G Borges, JI Ottaviani, JJJ van der Hooft, H Schroeter, A Crozier
Molecular Aspects of Medicine, 2017
1642017
NPClassifier: A deep neural network-based structural classification tool for natural products
HW Kim, M Wang, CA Leber, LF Nothias, R Reher, KB Kang, ...
Journal of Natural Products 84 (11), 2795-2807, 2021
1612021
Substructure‐based annotation of high‐resolution multistage MSn spectral trees
L Ridder, JJJ van der Hooft, S Verhoeven, RCH de Vos, R van Schaik, ...
Rapid Communications in Mass Spectrometry 26 (20), 2461-2471, 2012
1492012
Structural Elucidation and Quantification of Phenolic Conjugates Present in Human Urine after Tea Intake
JJJ van der Hooft, RCH de Vos, V Mihaleva, RJ Bino, L Ridder, N de Roo, ...
Analytical chemistry 84 (16), 7263-7271, 2012
1492012
Updates in metabolomics tools and resources: 2014–2015
BB Misra, JJJ van der Hooft
Electrophoresis 37 (1), 86-110, 2016
1422016
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Articles 1–20