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| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 16430 | 2019 |
| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature Methods 17 (9), 905-908, 2020 | 1014 | 2020 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints 6, e27295v2, 2018 | 1014 | 2018 |
| MIBiG 2.0: a repository for biosynthetic gene clusters of known function SA Kautsar, K Blin, S Shaw, JC Navarro-Muñoz, BR Terlouw, ... Nucleic acids research 48 (D1), D454-D458, 2020 | 629 | 2020 |
| The food metabolome: a window over dietary exposure A Scalbert, L Brennan, C Manach, C Andres-Lacueva, LO Dragsted, ... American Journal of Clinical Nutrition, Online first, 2014 | 534 | 2014 |
| Reproducible Molecular Networking Of Untargeted Mass Spectrometry Data Using GNPS. AT Aron, E Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ... ChemRxiv, 2019 | 509 | 2019 |
| The natural products atlas: an open access knowledge base for microbial natural products discovery JA Van Santen, G Jacob, AL Singh, V Aniebok, MJ Balunas, D Bunsko, ... ACS Central Science 5 (11), 1824-1833, 2019 | 354 | 2019 |
| Topic modeling for untargeted substructure exploration in metabolomics JJJ van der Hooft, J Wandy, MP Barrett, KEV Burgess, S Rogers Proceedings of the National Academy of Sciences of the United States of …, 2016 | 353 | 2016 |
| MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools M Ernst, KB Kang, AM Caraballo-Rodriguez, LF Nothias, J Wandy, ... Metabolites, 2019 | 340 | 2019 |
| Propagating annotations of molecular networks using in silico fragmentation RR da Silva, M Wang, LF Nothias, JJJ van der Hooft, ... PLoS computational biology 14 (4), e1006089, 2018 | 328 | 2018 |
| Human studies on the absorption, distribution, metabolism, and excretion of tea polyphenols MN Clifford, JJJ van der Hooft, A Crozier The American journal of clinical nutrition 98 (6), 1619S-1630S, 2013 | 264 | 2013 |
| Accelerating metabolite identification in natural product research: toward an ideal combination of LC-HRMS/MS and NMR profiling, in silico databases and chemometrics JL Wolfender, JM Nuzillard, JJJ van der Hooft, JH Renault, S Bertrand Analytical Chemistry, 2018 | 249* | 2018 |
| MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters BR Terlouw, K Blin, JC Navarro-Muñoz, NE Avalon, MG Chevrette, ... Nucleic acids research 51 (D1), D603-D610, 2023 | 243 | 2023 |
| NPClassifier: A deep neural network-based structural classification tool for natural products HW Kim, M Wang, CA Leber, LF Nothias, R Reher, KB Kang, ... Journal of Natural Products 84 (11), 2795-2807, 2021 | 242 | 2021 |
| Mass spectrometry searches using MASST M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ... Nature biotechnology 38 (1), 23-26, 2020 | 206 | 2020 |
| Absorption, metabolism, distribution and excretion of (−)-epicatechin: A review of recent findings G Borges, JI Ottaviani, JJJ van der Hooft, H Schroeter, A Crozier Molecular Aspects of Medicine, 2017 | 189 | 2017 |
| Orange juice (poly) phenols are highly bioavailable in humans G Pereira-Caro, G Borges, J van der Hooft, MN Clifford, D Del Rio, ... The American Journal of Clinical Nutrition 100 (5), 1378-1384, 2014 | 171 | 2014 |
| Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships F Huber, L Ridder, S Verhoeven, JH Spaaks, F Diblen, S Rogers, ... PLOS Computational Biology 17 (2), e1008724, 2021 | 163 | 2021 |
| Linking genomics and metabolomics to chart specialized metabolic diversity JJJ van der Hooft, H Mohimani, A Bauermeister, PC Dorrestein, ... Chemical Society Reviews, 2020 | 162 | 2020 |
Marnix MedemaProfessor of Bioinformatics at Wageningen UniversityVerified email at wur.nl
