| starBase v2. 0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data JH Li, S Liu, H Zhou, LH Qu, JH Yang Nucleic acids research 42 (Database issue), D92-7, 2014 | 4458 | 2014 |
| RMBase v2. 0: deciphering the map of RNA modifications from epitranscriptome sequencing data JJ Xuan, WJ Sun, PH Lin, KR Zhou, S Liu, LL Zheng, LH Qu, JH Yang Nucleic acids research 46 (D1), D327-D334, 2018 | 340 | 2018 |
| ChIPBase v2. 0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data KR Zhou, S Liu, WJ Sun, LL Zheng, H Zhou, JH Yang, LH Qu Nucleic Acids Research 45 (D1), D43-D50, 2017 | 250 | 2017 |
| deepBase v2. 0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data LL Zheng, JH Li, J Wu, WJ Sun, S Liu, ZL Wang, H Zhou, JH Yang, LH Qu Nucleic acids research, gkv1273, 2015 | 212 | 2015 |
| RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data WJ Sun, JH Li, S Liu, J Wu, H Zhou, LH Qu, JH Yang Nucleic acids research, gkv1036, 2015 | 182 | 2015 |
| m6A RNA modifications are measured at single-base resolution across the mammalian transcriptome L Hu, S Liu, Y Peng, R Ge, R Su, C Senevirathne, BT Harada, Q Dai, ... Nature biotechnology 40 (8), 1210-1219, 2022 | 136 | 2022 |
| tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers LL Zheng, WL Xu, S Liu, WJ Sun, JH Li, J Wu, JH Yang, LH Qu Nucleic acids research 44 (W1), W185-W193, 2016 | 123 | 2016 |
| RNA demethylation increases the yield and biomass of rice and potato plants in field trials Q Yu, S Liu, L Yu, Y Xiao, S Zhang, X Wang, Y Xu, H Yu, Y Li, J Yang, ... Nature Biotechnology 39 (12), 1581-1588, 2021 | 122 | 2021 |
| Stabilization of ERK-phosphorylated METTL3 by USP5 increases m6A methylation HL Sun, AC Zhu, Y Gao, H Terajima, Q Fei, S Liu, L Zhang, Z Zhang, ... Molecular cell 80 (4), 633-647. e7, 2020 | 97 | 2020 |
| Inhibition of the JNK/MAPK signaling pathway by myogenesis-associated miRNAs is required for skeletal muscle development SJ Xie, JH Li, HF Chen, YY Tan, SR Liu, Y Zhang, H Xu, JH Yang, S Liu, ... Cell Death & Differentiation 25 (9), 1581-1597, 2018 | 95 | 2018 |
| Discovery of protein–lncRNA interactions by integrating large-scale CLIP-Seq and RNA-Seq datasets JH Li, S Liu, LL Zheng, J Wu, WJ Sun, ZL Wang, H Zhou, LH Qu, JH Yang Frontiers in bioengineering and biotechnology 2, 88, 2015 | 79 | 2015 |
| REPIC: a database for exploring the N6-methyladenosine methylome S Liu, A Zhu, C He, M Chen Genome biology 21, 1-13, 2020 | 77 | 2020 |
| Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution Q Dai, LS Zhang, HL Sun, K Pajdzik, L Yang, C Ye, CW Ju, S Liu, Y Wang, ... Nature biotechnology 41 (3), 344-354, 2023 | 75 | 2023 |
| miR‐372 and miR‐373 enhance the stemness of colorectal cancer cells by repressing differentiation signaling pathways LQ Wang, P Yu, B Li, YH Guo, ZR Liang, LL Zheng, JH Yang, H Xu, S Liu, ... Molecular oncology 12 (11), 1949-1964, 2018 | 65 | 2018 |
| Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination YL Xiao, S Liu, R Ge, Y Wu, C He, M Chen, W Tang Nature biotechnology 41 (7), 993-1003, 2023 | 63 | 2023 |
| dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease LL Zheng, KR Zhou, S Liu, DY Zhang, ZL Wang, ZR Chen, JH Yang, ... Nucleic Acids Research 46 (D1), D85-D91, 2018 | 55 | 2018 |
| StarScan: a web server for scanning small RNA targets from degradome sequencing data S Liu, JH Li, J Wu, KR Zhou, H Zhou, JH Yang, LH Qu Nucleic acids research, gkv524, 2015 | 30 | 2015 |
| m6A-SAC-seq for quantitative whole transcriptome m6A profiling R Ge, C Ye, Y Peng, Q Dai, Y Zhao, S Liu, P Wang, L Hu, C He Nature protocols 18 (2), 626-657, 2023 | 16 | 2023 |
| ColorCells: a database of expression, classification and functions of lncRNAs in single cells LL Zheng, JH Xiong, WJ Zheng, JH Wang, ZL Huang, ZR Chen, XY Sun, ... Briefings in Bioinformatics 22 (4), bbaa325, 2021 | 13 | 2021 |
| RBM33 is a unique m6A RNA-binding protein that regulates ALKBH5 demethylase activity and substrate selectivity F Yu, AC Zhu, S Liu, B Gao, Y Wang, N Khudaverdyan, C Yu, Q Wu, ... Molecular Cell 83 (12), 2003-2019. e6, 2023 | 11 | 2023 |
Jianhua YangProfessor of Life Sciences, Sun Yat-sen UniversityVerified email at mail.sysu.edu.cn
