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Ashlee Earl
Ashlee Earl
Broad Institute of MIT & Harvard
Verified email at broadinstitute.org
Title
Cited by
Cited by
Year
Structure, function and diversity of the healthy human microbiome
Human Microbiome Project Consortium
nature 486 (7402), 207, 2012
81382012
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement
BJ Walker, T Abeel, T Shea, M Priest, A Abouelliel, S Sakthikumar, ...
PloS one 9 (11), e112963, 2014
42912014
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ...
Genome research 21 (3), 494-504, 2011
27812011
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
19332012
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
AD Kostic, D Gevers, CS Pedamallu, M Michaud, F Duke, AM Earl, ...
Genome research 22 (2), 292-298, 2012
15762012
A catalog of reference genomes from the human microbiome
Human Microbiome Jumpstart Reference Strains Consortium, KE Nelson, ...
Science 328 (5981), 994-999, 2010
7572010
Individual intestinal symbionts induce a distinct population of RORγ+ regulatory T cells
E Sefik, N Geva-Zatorsky, S Oh, L Konnikova, D Zemmour, AM McGuire, ...
Science 349 (6251), 993-997, 2015
5902015
Ecology and genomics of Bacillus subtilis
AM Earl, R Losick, R Kolter
Trends in microbiology 16 (6), 269-275, 2008
5572008
Relating the metatranscriptome and metagenome of the human gut
EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ...
Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014
5102014
Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a …
FA Rainey, K Ray, M Ferreira, BZ Gatz, MF Nobre, D Bagaley, BA Rash, ...
Applied and environmental microbiology 71 (9), 5225-5235, 2005
4072005
Gut microbiota utilize immunoglobulin A for mucosal colonization
GP Donaldson, MS Ladinsky, KB Yu, JG Sanders, BB Yoo, WC Chou, ...
Science 360 (6390), 795-800, 2018
3672018
Fap2 mediates Fusobacterium nucleatum colorectal adenocarcinoma enrichment by binding to tumor-expressed Gal-GalNAc
J Abed, JEM Emgård, G Zamir, M Faroja, G Almogy, A Grenov, A Sol, ...
Cell host & microbe 20 (2), 215-225, 2016
3612016
Why is Deinococcus radiodurans so resistant to ionizing radiation?
JR Battista, AM Earl, MJ Park
Trends in microbiology 7 (9), 362-365, 1999
3491999
Analysis of Deinococcus radiodurans's Transcriptional Response to Ionizing Radiation and Desiccation Reveals Novel Proteins That Contribute to Extreme …
M Tanaka, AM Earl, HA Howell, MJ Park, JA Eisen, SN Peterson, ...
Genetics 168 (1), 21-33, 2004
3292004
Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains
F Lebreton, W van Schaik, A Manson McGuire, P Godfrey, A Griggs, ...
MBio 4 (4), e00534-13, 2013
3222013
Evaluation of 16S rDNA-based community profiling for human microbiome research
Jumpstart Consortium Human Microbiome Project Data Generation Working Group
PloS one 7 (6), e39315, 2012
2752012
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
G Giannoukos, DM Ciulla, K Huang, BJ Haas, J Izard, JZ Levin, J Livny, ...
Genome biology 13 (3), 1-13, 2012
2432012
Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates …
KA Cohen, T Abeel, A Manson McGuire, CA Desjardins, V Munsamy, ...
PLoS medicine 12 (9), e1001880, 2015
2302015
Biofilm Development with an Emphasis on Bacillus subtilis
KP Lemon, AM Earl, HC Vlamakis, C Aguilar, R Kolter
Bacterial biofilms, 1-16, 2008
2282008
Whole genome characterization of the mechanisms of daptomycin resistance in clinical and laboratory derived isolates of Staphylococcus aureus
AY Peleg, S Miyakis, DV Ward, AM Earl, A Rubio, DR Cameron, S Pillai, ...
PloS one 7 (1), e28316, 2012
2162012
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