Multilevel selection in models of prebiotic evolution: compartments and spatial self-organization

P Hogeweg, N Takeuchi - Origins of Life and Evolution of the Biosphere, 2003 - Springer
In this paper we explore the impact of new levels ofselection in models of early evolution.We
contrast two types of higher levels of selection. On the one hand we look at spatially …

[HTML][HTML] Evolutionary dynamics of RNA-like replicator systems: a bioinformatic approach to the origin of life

N Takeuchi, P Hogeweg - Physics of Life Reviews, 2012 - Elsevier
We review computational studies on prebiotic evolution, focusing on informatic processes in
RNA-like replicator systems. In particular, we consider the following processes: the …

[HTML][HTML] From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics

S Manrubia, JA Cuesta, J Aguirre, SE Ahnert… - Physics of Life …, 2021 - Elsevier
Understanding how genotypes map onto phenotypes, fitness, and eventually organisms is
arguably the next major missing piece in a fully predictive theory of evolution. We refer to this …

Auxin transport is sufficient to generate a maximum and gradient guiding root growth

VA Grieneisen, J Xu, AFM Marée, P Hogeweg… - Nature, 2007 - nature.com
The plant growth regulator auxin controls cell identity, cell division and cell expansion. Auxin
efflux facilitators (PINs) are associated with auxin maxima in distal regions of both shoots …

Spiral wave structure in pre-biotic evolution: hypercycles stable against parasites

MC Boerlijst, P Hogeweg - Physica D: Nonlinear Phenomena, 1991 - Elsevier
In the study of pre-biotic evolution self-structuring and evolutionary processes are themes that
are usually studied separately. In this paper we demonstrate that spatial self-structuring in …

The roots of bioinformatics in theoretical biology

P Hogeweg - PLoS computational biology, 2011 - journals.plos.org
From the late 1980s onward, the term “bioinformatics” mostly has been used to refer to
computational methods for comparative analysis of genome data. However, the term was …

Root system architecture from coupling cell shape to auxin transport

M Laskowski, VA Grieneisen, H Hofhuis, CA Hove… - PLoS …, 2008 - journals.plos.org
Lateral organ position along roots and shoots largely determines plant architecture, and
depends on auxin distribution patterns. Determination of the underlying patterning mechanisms …

The alignment of sets of sequences and the construction of phyletic trees: an integrated method

P Hogeweg, B Hesper - Journal of molecular evolution, 1984 - Springer
… Science 209:457-463 Hogeweg P (1976a) Iterative character weighting in numerical
taxonomy. Comput Biol Med 6:166-211 Hogeweg P (1976b) Topics in biological pattern analysis. …

Cellular automata as a paradigm for ecological modeling

P Hogeweg - Applied mathematics and computation, 1988 - Elsevier
We review cellular automata as a modeling formalism and discuss how it can be used for
modeling (spatial) ecological processes. The implications of this modeling paradigm for …

Modelling morphogenesis: from single cells to crawling slugs

NJ Savill, P Hogeweg - Journal of theoretical biology, 1997 - Elsevier
We present a three-dimensional hybrid cellular automata (CA)/partial differential equation (PDE)
model that allows for the study of morphogenesis in simple cellular systems. We apply …