[HTML][HTML] Poised RNA polymerase II gives pause for thought

T Margaritis, FCP Holstege - Cell, 2008 - cell.com
Transcription by RNA polymerase II (Pol II) is thought to be predominantly regulated by
recruitment of Pol II to promoters. Recent genome-wide analyses demonstrate that many genes …

Minimum information about a microarray experiment (MIAME)—toward standards for microarray data

A Brazma, P Hingamp, J Quackenbush, G Sherlock… - Nature …, 2001 - nature.com
Microarray analysis has become a widely used tool for the generation of gene expression data
on a genomic scale. Although many significant results have been derived from microarray …

[HTML][HTML] Dissecting the regulatory circuitry of a eukaryotic genome

FCP Holstege, EG Jennings, JJ Wyrick, TI Lee… - Cell, 1998 - cell.com
Genome-wide expression analysis was used to identify genes whose expression depends
on the functions of key components of the transcription initiation machinery in yeast. …

Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

SR Collins, P Kemmeren, XC Zhao… - Molecular & Cellular …, 2007 - ASBMB
Defining protein complexes is critical to virtually all aspects of cell biology. Two recent affinity
purification/mass spectrometry studies in Saccharomyces cerevisiae have vastly increased …

Specific inhibition of gene expression using a stably integrated, inducible small‐interfering‐RNA vector

M Van De Wetering, I Oving, V Muncan… - EMBO …, 2003 - embopress.org
We have designed a doxycycline‐regulated form of the H1 promoter of RNA polymerase III
that allows the inducible knockdown of gene expression by small interfering RNAs (siRNAs). …

An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas

P Roepman, LFA Wessels, N Kettelarij, P Kemmeren… - Nature …, 2005 - nature.com
Metastasis is the process by which cancers spread to distinct sites in the body. It is the
principal cause of death in individuals suffering from cancer. For some types of cancer, early …

Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast

JJ Wyrick, FCP Holstege, EG Jennings, HC Causton… - Nature, 1999 - nature.com
Eukaryotic genomes are packaged into nucleosomes, which are thought to repress gene
expression generally 1 , 2 , 3 . Repression is particularly evident at yeast telomeres, where …

Redundant roles for the TFIID and SAGA complexes in global transcription

TI Lee, HC Causton, FCP Holstege, WC Shen… - Nature, 2000 - nature.com
The transcription factors TFIID and SAGA are multi-subunit complexes involved in transcription
by RNA polymerase II 1 , 2 . TFIID and SAGA contain common TATA-binding protein (TBP…

[HTML][HTML] Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors

P Kemmeren, K Sameith, LAL Van De Pasch… - Cell, 2014 - cell.com
To understand regulatory systems, it would be useful to uniformly determine how different
components contribute to the expression of all other genes. We therefore monitored mRNA …

Uterine selection of human embryos at implantation

JJ Brosens, MS Salker, G Teklenburg, J Nautiyal… - Scientific reports, 2014 - nature.com
Human embryos frequently harbor large-scale complex chromosomal errors that impede
normal development. Affected embryos may fail to implant although many first breach the …