Gebruikersprofielen voor "Perrakis, A. "

Anastassis Perrakis

Division of Biochemistry, Netherlands Cancer Institute and Oncode Institute, Prof Utrecht U
Geverifieerd e-mailadres voor nki.nl
Geciteerd door 23898

Autotaxin: structure-function and signaling

A Perrakis, WH Moolenaar - Journal of lipid research, 2014 - ASBMB
Autotaxin (ATX), or ecto-nucleotide pyrophosphatase/phosphodiesterase-2, is a secreted
lysophospholipase D (lysoPLD) that hydrolyzes extracellular lysophospholipids into the lipid …

Automated protein model building combined with iterative structure refinement

A Perrakis, R Morris, VS Lamzin - Nature structural biology, 1999 - nature.com
In protein crystallography, much time and effort are often required to trace an initial model
from an interpretable electron density map and to refine it until it best agrees with the …

Insights into autotaxin: how to produce and present a lipid mediator

WH Moolenaar, A Perrakis - Nature reviews Molecular cell biology, 2011 - nature.com
Autotaxin (ATX) is a secreted phosphodiesterase that produces the lipid mediator lysophosphatidic
acid (LPA). LPA acts through specific guanine-nucleotide-binding protein (G protein)-…

wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models

A Perrakis, TK Sixma, KS Wilson… - … Section D: Biological …, 1997 - journals.iucr.org
wARP is a procedure that substantially improves crystallographic phases (and subsequently
electron-density maps) as an additional step after density-modification methods such as …

[HTML][HTML] ARP/wARP and molecular replacement

A Perrakis, M Harkiolaki, KS Wilson… - … Section D: Biological …, 2001 - scripts.iucr.org
The aim of ARP/wARP is improved automation of model building and refinement in
macromolecular crystallography. Once a molecular-replacement solution has been obtained, it is …

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

G Langer, SX Cohen, VS Lamzin, A Perrakis - Nature protocols, 2008 - nature.com
ARP/wARP is a software suite to build macromolecular models in X-ray crystallography
electron density maps. Structural genomics initiatives and the study of complex macromolecular …

Structure and function of the ecto-nucleotide pyrophosphatase/phosphodiesterase (ENPP) family: Tidying up diversity

R Borza, F Salgado-Polo, WH Moolenaar… - Journal of Biological …, 2022 - ASBMB
Ecto-nucleotide pyrophosphatase/phosphodiesterase (ENPP) family members (ENPP1–7)
have been implicated in key biological and pathophysiological processes, including …

ARP⧸ wARP and automatic interpretation of protein electron density maps

RJ Morris, A Perrakis, VS Lamzin - Methods in enzymology, 2003 - Elsevier
Publisher Summary This chapter presents phase improvement, coupled with automated
map interpretation and model building, as one unified process within the framework of the …

Crystal structure of a bacterial chitinase at 2.3 Å resolution

A Perrakis, I Tews, Z Dauter, AB Oppenheim, I Chet… - Structure, 1994 - cell.com
Background: Chitinases cleave the β–1-4-glycosidicbond between the N–acetyl–D–glucosamine
units of which chitin is comprised. Chitinases are present in plants, bacteria and fungi, …

AlphaFill: enriching AlphaFold models with ligands and cofactors

ML Hekkelman, I de Vries, RP Joosten, A Perrakis - Nature Methods, 2023 - nature.com
Artificial intelligence-based protein structure prediction approaches have had a transformative
effect on biomolecular sciences. The predicted protein models in the AlphaFold protein …