Gebruikersprofielen voor "Zwart, P. "

Peter Zwart

Lawrence Berkeley National Laboratories
Geverifieerd e-mailadres voor lbl.gov
Geciteerd door 40022

The Phenix software for automated determination of macromolecular structures

PD Adams, PV Afonine, G Bunkóczi, VB Chen… - Methods, 2011 - Elsevier
X-ray crystallography is a critical tool in the study of biological systems. It is able to provide
information that has been a prerequisite to understanding the fundamentals of life. It is also a …

Gaussian processes for autonomous data acquisition at large-scale synchrotron and neutron facilities

MM Noack, PH Zwart, DM Ushizima, M Fukuto… - Nature Reviews …, 2021 - nature.com
The execution and analysis of complex experiments are challenged by the vast dimensionality
of the underlying parameter spaces. Although an increase in data-acquisition rates …

[PDF][PDF] PHENIX: a comprehensive Python-based system for macromolecular structure solution

PD Adams, PV Afonine, G Bunkóczi… - … Section D: Biological …, 2010 - journals.iucr.org
Macromolecular X-ray crystallography is routinely applied to understand biological processes
at a molecular level. However, significant time and effort are still required to solve and …

[PDF][PDF] Towards automated crystallographic structure refinement with phenix. refine

PV Afonine, RW Grosse-Kunstleve… - … Section D: Biological …, 2012 - journals.iucr.org
phenix.refine is a program within the PHENIX package that supports crystallographic structure
refinement against experimental data with a wide range of upper resolution limits using a …

[HTML][HTML] Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

TC Terwilliger, RW Grosse-Kunstleve… - … Section D: Biological …, 2008 - scripts.iucr.org
The PHENIX AutoBuild wizard is a highly automated tool for iterative model building, structure
refinement and density modification using RESOLVE model building, RESOLVE statistical …

[PDF][PDF] Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard

TC Terwilliger, PD Adams, RJ Read… - … Section D: Biological …, 2009 - journals.iucr.org
Estimates of the quality of experimental maps are important in many stages of structure
determination of macromolecules. Map quality is defined here as the correlation between a map …

[PDF][PDF] A two-phase flow model for predicting cavitation dynamics

PJ Zwart, AG Gerber, T Belamri - Fifth international conference …, 2004 - researchgate.net
A robust CFD methodology for predicting three-dimensional flows with extensive cavitation is
presented. The model is based on the multiphase flow equations, with mass transfer due to …

[BOEK][B] Automated structure solution with the PHENIX suite

PH Zwart, PV Afonine, RW Grosse-Kunstleve, LW Hung… - 2008 - Springer
Significant time and effort are often required to solve and complete a macromolecular crystal
structure. The development of automated computational methods for the analysis, solution, …

A new generation of crystallographic validation tools for the protein data bank

RJ Read, PD Adams, WB Arendall, AT Brunger… - Structure, 2011 - cell.com
This report presents the conclusions of the X-ray Validation Task Force of the worldwide
Protein Data Bank (PDB). The PDB has expanded massively since current criteria for validation …

Simultaneous femtosecond X-ray spectroscopy and diffraction of photosystem II at room temperature

J Kern, R Alonso-Mori, R Tran, J Hattne, RJ Gildea… - Science, 2013 - science.org
Intense femtosecond x-ray pulses produced at the Linac Coherent Light Source (LCLS) were
used for simultaneous x-ray diffraction (XRD) and x-ray emission spectroscopy (XES) of …