| Scaffolding pre-assembled contigs using SSPACE M Boetzer, CV Henkel, HJ Jansen, D Butler, W Pirovano Bioinformatics 27 (4), 578-579, 2011 | 2534 | 2011 |
| The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system FJ Vonk, NR Casewell, CV Henkel, AM Heimberg, HJ Jansen, ... Proceedings of the National Academy of Sciences 110 (51), 20651-20656, 2013 | 494 | 2013 |
| MinION Analysis and Reference Consortium: Phase 1 data release and analysis CLC Ip, M Loose, JR Tyson, M de Cesare, BL Brown, M Jain, RM Leggett, ... F1000Research 4, 2015 | 332 | 2015 |
| Primitive duplicate Hox clusters in the European eel's genome CV Henkel, E Burgerhout, DL de Wijze, RP Dirks, Y Minegishi, HJ Jansen, ... PloS one 7 (2), e32231, 2012 | 162 | 2012 |
| MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9. 0 chemistry M Jain, JR Tyson, M Loose, CLC Ip, DA Eccles, J O'Grady, S Malla, ... F1000Research 6, 2017 | 146 | 2017 |
| Rapid de novo assembly of the European eel genome from nanopore sequencing reads HJ Jansen, M Liem, SA Jong-Raadsen, S Dufour, FA Weltzien, ... Scientific reports 7 (1), 7213, 2017 | 126 | 2017 |
| First draft genome sequence of the Japanese eel, Anguilla japonica CV Henkel, RP Dirks, DL de Wijze, Y Minegishi, J Aoyama, HJ Jansen, ... Gene 511 (2), 195-201, 2012 | 119 | 2012 |
| Robotic injection of zebrafish embryos for high-throughput screening in disease models HP Spaink, C Cui, MI Wiweger, HJ Jansen, WJ Veneman, R Marín-Juez, ... Methods 62 (3), 246-254, 2013 | 117 | 2013 |
| Extensive Polycistronism and Antisense Transcription in the Mammalian Hox Clusters G Mainguy, J Koster, J Woltering, H Jansen, A Durston PLoS One 2 (4), e356, 2007 | 107 | 2007 |
| Timed interactions between the Hox expressing non-organiser mesoderm and the Spemann organiser generate positional information during vertebrate gastrulation SA Wacker, HJ Jansen, CL McNulty, E Houtzager, AJ Durston Developmental Biology 268 (1), 207-219, 2004 | 103 | 2004 |
| Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection A Ordas, Z Hegedus, CV Henkel, OW Stockhammer, D Butler, HJ Jansen, ... Fish & shellfish immunology 31 (5), 716-724, 2011 | 100 | 2011 |
| Comparison of the Exomes of Common Carp (Cyprinus carpio) and Zebrafish (Danio rerio) CV Henkel, RP Dirks, HJ Jansen, M Forlenza, GF Wiegertjes, K Howe, ... Zebrafish 9 (2), 59-67, 2012 | 92 | 2012 |
| RNAseq profiling of leukocyte populations in zebrafish larvae reveals a cxcl11 chemokine gene as a marker of macrophage polarization during mycobacterial infection J Rougeot, V Torraca, A Zakrzewska, Z Kanwal, HJ Jansen, F Sommer, ... Frontiers in immunology 10, 443723, 2019 | 80 | 2019 |
| Deep RNA sequencing of the skeletal muscle transcriptome in swimming fish AP Palstra, S Beltran, E Burgerhout, SA Brittijn, LJ Magnoni, CV Henkel, ... PloS one 8 (1), e53171, 2013 | 80 | 2013 |
| Testing tuberculosis drug efficacy in a zebrafish high-throughput translational medicine screen A Ordas, RJ Raterink, F Cunningham, HJ Jansen, MI Wiweger, ... Antimicrobial agents and chemotherapy 59 (2), 753-762, 2015 | 65 | 2015 |
| Hox collinearity - a new perspective AJ Durston, HJ Jansen, P In der Rieden, MHW Hooiveld The International journal of developmental biology 55 (10-11-12), 899-908, 2011 | 46 | 2011 |
| Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function K Reddington, D Eccles, J O'Grady, DM Drown, LH Hansen, TK Nielsen, ... GigaScience 9 (6), giaa053, 2020 | 44 | 2020 |
| Time–space translation regulates trunk axial patterning in the early vertebrate embryo AJ Durston, HJ Jansen, SA Wacker Genomics 95 (5), 250-255, 2010 | 43 | 2010 |
| The 35S-CaMV promoter is silent during early embryogenesis but activated during nonembryogenic sporophytic development in microspore culture JBM Custers, S Snepvangers, HJ Jansen, L Zhang, ... Protoplasma 208, 257-264, 1999 | 43 | 1999 |
| RNA sequencing of FACS-sorted immune cell populations from zebrafish infection models to identify cell specific responses to intracellular pathogens J Rougeot, A Zakrzewska, Z Kanwal, HJ Jansen, HP Spaink, AH Meijer Host-Bacteria Interactions: Methods and Protocols, 261-274, 2014 | 39 | 2014 |
